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  5. AFR95654

AFR95654


Description : DNA-directed RNA polymerase II subunit RPB1;RNA polymerase Rpb1, domain 2;RNA polymerase Rpb1, domain 1;RNA polymerase Rpb1, domain 7;RNA polymerase Rpb1, domain 6;RNA polymerase Rpb1, domain 4;RNA polymerase Rpb1, domain 3;RNA polymerase Rpb1 C-terminal repeat;RNA polymerase Rpb1, domain 5


Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AFR95654
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AOA68763 No alias RNA polymerase Rpb1, domain 6 0.12 OF
AOA70277 No alias RNA polymerase Rpb1, domain 5 0.09 OF
CAG82229 No alias RNA polymerase Rpb1, domain 6 0.11 OF
CAK37321 No alias RNA polymerase Rpb1 C-terminal repeat 0.09 OF
CAK96852 No alias RNA polymerase Rpb1, domain 3 0.02 OF
CBF87003 No alias hypothetical protein similar to RNA polymerase III 0.05 OF
CBF88741 No alias DNA-directed RNA polymerase Fragment 0.08 OF
EAA34861 No alias RNA polymerase Rpb1, domain 3 0.09 OF
EAL90799 No alias DNA-dependent RNA polymerase II largest subunit, putative 0.08 OF
EAL92151 No alias DNA-directed RNA polymerase III largest subunit, putative 0.05 OF
EAU80581 No alias DNA-directed RNA polymerase III largest subunit 0.02 OF
EAU93247 No alias RNA polymerase II large subunit 0.08 OF
EDO03447 No alias RNA polymerase, alpha subunit 0.08 OF
EED85755 No alias RNA polymerase Rpb1, domain 7 0.05 OF
EGR49933 No alias RNA polymerase Rpb1, domain 5 0.04 OF
EJF58827 No alias RNA polymerase Rpb1, domain 3 0.07 OF
ESU06166 No alias DNA-directed RNA polymerase II largest subunit 0.11 OF
ESU16499 No alias DNA-directed RNA polymerase III largest subunit 0.02 OF
KHC69799 No alias DNA-directed RNA polymerase II subunit RPB1;"RNA... 0.07 OF
KHC76777 No alias DNA-directed RNA polymerase III subunit RPC1;"RNA... 0.08 OF
MGG_04477T0 No alias DNA-directed RNA polymerase III subunit RPC1... 0.1 OF
MGG_04652T0 No alias DNA-directed RNA polymerase II largest subunit... 0.03 OF
POW02026 No alias RNA polymerase, alpha subunit;RNA polymerase Rpb1,... 0.07 OF
POW18023 No alias RNA polymerase Rpb1, domain 1;RNA polymerase Rpb1,... 0.03 OF
SPBC28F2.12.1 No alias RNA polymerase II large subunit Rpb1... 0.05 OF
SPBC651.08c.1 No alias DNA-directed RNA polymerase III complex large subunit... 0.03 OF
YDL140C No alias RNA polymerase II largest subunit B220; part of central... 0.11 OF
YOR116C No alias RNA polymerase III largest subunit C160; part of core... 0.11 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 358 522
IPR007080 RNA_pol_Rpb1_1 13 356
IPR007073 RNA_pol_Rpb1_7 1157 1286
IPR007075 RNA_pol_Rpb1_6 890 1072
IPR007083 RNA_pol_Rpb1_4 712 817
IPR007066 RNA_pol_Rpb1_3 526 686
IPR000684 RNA_pol_II_repeat_euk 1667 1680
IPR000684 RNA_pol_II_repeat_euk 1599 1612
IPR000684 RNA_pol_II_repeat_euk 1681 1693
IPR000684 RNA_pol_II_repeat_euk 1738 1751
IPR000684 RNA_pol_II_repeat_euk 1593 1605
IPR000684 RNA_pol_II_repeat_euk 1662 1673
IPR000684 RNA_pol_II_repeat_euk 1710 1723
IPR000684 RNA_pol_II_repeat_euk 1646 1657
IPR000684 RNA_pol_II_repeat_euk 1564 1573
IPR000684 RNA_pol_II_repeat_euk 1674 1687
IPR000684 RNA_pol_II_repeat_euk 1613 1626
IPR000684 RNA_pol_II_repeat_euk 1697 1709
IPR000684 RNA_pol_II_repeat_euk 1724 1737
IPR000684 RNA_pol_II_repeat_euk 1582 1598
IPR007081 RNA_pol_Rpb1_5 824 1408
No external refs found!