Description : DNA-directed RNA polymerase II subunit RPB1;RNA polymerase Rpb1, domain 2;RNA polymerase Rpb1, domain 1;RNA polymerase Rpb1, domain 7;RNA polymerase Rpb1, domain 6;RNA polymerase Rpb1, domain 4;RNA polymerase Rpb1, domain 3;RNA polymerase Rpb1 C-terminal repeat;RNA polymerase Rpb1, domain 5
Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AFR95654 | |
Cluster | HCCA: Cluster_56 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AOA68763 | No alias | RNA polymerase Rpb1, domain 6 | 0.12 | OF | |
AOA70277 | No alias | RNA polymerase Rpb1, domain 5 | 0.09 | OF | |
CAG82229 | No alias | RNA polymerase Rpb1, domain 6 | 0.11 | OF | |
CAK37321 | No alias | RNA polymerase Rpb1 C-terminal repeat | 0.09 | OF | |
CAK96852 | No alias | RNA polymerase Rpb1, domain 3 | 0.02 | OF | |
CBF87003 | No alias | hypothetical protein similar to RNA polymerase III | 0.05 | OF | |
CBF88741 | No alias | DNA-directed RNA polymerase Fragment | 0.08 | OF | |
EAA34861 | No alias | RNA polymerase Rpb1, domain 3 | 0.09 | OF | |
EAL90799 | No alias | DNA-dependent RNA polymerase II largest subunit, putative | 0.08 | OF | |
EAL92151 | No alias | DNA-directed RNA polymerase III largest subunit, putative | 0.05 | OF | |
EAU80581 | No alias | DNA-directed RNA polymerase III largest subunit | 0.02 | OF | |
EAU93247 | No alias | RNA polymerase II large subunit | 0.08 | OF | |
EDO03447 | No alias | RNA polymerase, alpha subunit | 0.08 | OF | |
EED85755 | No alias | RNA polymerase Rpb1, domain 7 | 0.05 | OF | |
EGR49933 | No alias | RNA polymerase Rpb1, domain 5 | 0.04 | OF | |
EJF58827 | No alias | RNA polymerase Rpb1, domain 3 | 0.07 | OF | |
ESU06166 | No alias | DNA-directed RNA polymerase II largest subunit | 0.11 | OF | |
ESU16499 | No alias | DNA-directed RNA polymerase III largest subunit | 0.02 | OF | |
KHC69799 | No alias | DNA-directed RNA polymerase II subunit RPB1;"RNA... | 0.07 | OF | |
KHC76777 | No alias | DNA-directed RNA polymerase III subunit RPC1;"RNA... | 0.08 | OF | |
MGG_04477T0 | No alias | DNA-directed RNA polymerase III subunit RPC1... | 0.1 | OF | |
MGG_04652T0 | No alias | DNA-directed RNA polymerase II largest subunit... | 0.03 | OF | |
POW02026 | No alias | RNA polymerase, alpha subunit;RNA polymerase Rpb1,... | 0.07 | OF | |
POW18023 | No alias | RNA polymerase Rpb1, domain 1;RNA polymerase Rpb1,... | 0.03 | OF | |
SPBC28F2.12.1 | No alias | RNA polymerase II large subunit Rpb1... | 0.05 | OF | |
SPBC651.08c.1 | No alias | DNA-directed RNA polymerase III complex large subunit... | 0.03 | OF | |
YDL140C | No alias | RNA polymerase II largest subunit B220; part of central... | 0.11 | OF | |
YOR116C | No alias | RNA polymerase III largest subunit C160; part of core... | 0.11 | OF |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | transcription, DNA-templated | IEA | Interproscan |
BP | GO:0006366 | transcription by RNA polymerase II | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000722 | RNA_pol_asu | 358 | 522 |
IPR007080 | RNA_pol_Rpb1_1 | 13 | 356 |
IPR007073 | RNA_pol_Rpb1_7 | 1157 | 1286 |
IPR007075 | RNA_pol_Rpb1_6 | 890 | 1072 |
IPR007083 | RNA_pol_Rpb1_4 | 712 | 817 |
IPR007066 | RNA_pol_Rpb1_3 | 526 | 686 |
IPR000684 | RNA_pol_II_repeat_euk | 1667 | 1680 |
IPR000684 | RNA_pol_II_repeat_euk | 1599 | 1612 |
IPR000684 | RNA_pol_II_repeat_euk | 1681 | 1693 |
IPR000684 | RNA_pol_II_repeat_euk | 1738 | 1751 |
IPR000684 | RNA_pol_II_repeat_euk | 1593 | 1605 |
IPR000684 | RNA_pol_II_repeat_euk | 1662 | 1673 |
IPR000684 | RNA_pol_II_repeat_euk | 1710 | 1723 |
IPR000684 | RNA_pol_II_repeat_euk | 1646 | 1657 |
IPR000684 | RNA_pol_II_repeat_euk | 1564 | 1573 |
IPR000684 | RNA_pol_II_repeat_euk | 1674 | 1687 |
IPR000684 | RNA_pol_II_repeat_euk | 1613 | 1626 |
IPR000684 | RNA_pol_II_repeat_euk | 1697 | 1709 |
IPR000684 | RNA_pol_II_repeat_euk | 1724 | 1737 |
IPR000684 | RNA_pol_II_repeat_euk | 1582 | 1598 |
IPR007081 | RNA_pol_Rpb1_5 | 824 | 1408 |
No external refs found! |