CAK39557

Description : RNA recognition motif of the spliceosomal PrP8

Gene families : OG_03_0001356 (OF) Phylogenetic Tree(s): OG0001356_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CAK39557
Cluster	HCCA: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
AFR92284	No alias	pre-mRNA-processing-splicing factor 8;RNA recognition...	0.02	OF
AOA68888	No alias	RNA recognition motif, spliceosomal PrP8	0.04	OF
CAG81996	No alias	PROCN domain	0.1	OF
CBF77331	No alias	MRNA splicing protein PRP8	0.15	OF
EAA33717	No alias	PROCT domain	0.2	OF
EAL87400	No alias	pre-mRNA splicing factor (Prp8), putative	0.07	OF
EAU86045	No alias	pre-mRNA-processing-splicing factor	0.02	OF
EDO00734	No alias	PROCT domain	0.1	OF
EDO00735	No alias	PROCN domain	0.11	OF
EGR48671	No alias	PRO8NT domain	0.06	OF
EJF57100	No alias	PROCN (NUC071) domain	0.05	OF
ESU07986	No alias	pre-mRNA-processing-splicing factor 8	0.16	OF
KHC70723	No alias	pre-mRNA-processing factor 8;PROCN (NUC071)...	0.09	OF
MGG_05244T0	No alias	Pre-mRNA-processing-splicing factor 8...	0.08	OF
POV99819	No alias	PROCN domain	0.04	OF
POW11326	No alias	PRO8NT domain;PROCN domain	0.02	OF
SPAC4F8.12c.1	No alias	U5 snRNP complex subunit Spp42 [Source:PomBase;Acc:SPAC4F8.12c]	0.04	OF
YHR165C	No alias	Component of U4/U6-U5 snRNP complex; involved in second...	0.08	OF

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0017069	snRNA binding	None	Extended
MF	GO:0017070	U6 snRNA binding	IEA	Interproscan
MF	GO:0030623	U5 snRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR019582	RRM_spliceosomal_PrP8	1004	1094
IPR012591	PRO8NT	68	219
IPR019580	Prp8_U6-snRNA-bd	1460	1618
IPR012984	PROCT	2230	2350
IPR021983	PRP8_domainIV	1780	2007
IPR019581	Prp8_U5-snRNA-bd	1228	1361
IPR012592	PROCN	415	819

External Links

No external refs found!

CAK39557

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation