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  5. CAK37321

CAK37321


Description : RNA polymerase Rpb1 C-terminal repeat


Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CAK37321
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AFR95654 No alias DNA-directed RNA polymerase II subunit RPB1;RNA... 0.09 OF
AFR96255 No alias DNA-directed RNA polymerase III subunit RPC1;RNA... 0.05 OF
AOA68763 No alias RNA polymerase Rpb1, domain 6 0.06 OF
AOA70277 No alias RNA polymerase Rpb1, domain 5 0.05 OF
CAG82229 No alias RNA polymerase Rpb1, domain 6 0.11 OF
CBF87003 No alias hypothetical protein similar to RNA polymerase III 0.06 OF
CBF88741 No alias DNA-directed RNA polymerase Fragment 0.15 OF
EAA27335 No alias RNA polymerase Rpb1, domain 5 0.03 OF
EAA34861 No alias RNA polymerase Rpb1, domain 3 0.13 OF
EAL90799 No alias DNA-dependent RNA polymerase II largest subunit, putative 0.17 OF
EAL92151 No alias DNA-directed RNA polymerase III largest subunit, putative 0.06 OF
EAU80581 No alias DNA-directed RNA polymerase III largest subunit 0.02 OF
EAU93247 No alias RNA polymerase II large subunit 0.07 OF
EDO03447 No alias RNA polymerase, alpha subunit 0.11 OF
EED85755 No alias RNA polymerase Rpb1, domain 7 0.06 OF
EGR47538 No alias RNA polymerase Rpb1, domain 1 0.03 OF
EJF58827 No alias RNA polymerase Rpb1, domain 3 0.1 OF
ESU06166 No alias DNA-directed RNA polymerase II largest subunit 0.18 OF
ESU16499 No alias DNA-directed RNA polymerase III largest subunit 0.07 OF
KHC69799 No alias DNA-directed RNA polymerase II subunit RPB1;"RNA... 0.04 OF
KHC76777 No alias DNA-directed RNA polymerase III subunit RPC1;"RNA... 0.06 OF
MGG_04477T0 No alias DNA-directed RNA polymerase III subunit RPC1... 0.08 OF
MGG_04652T0 No alias DNA-directed RNA polymerase II largest subunit... 0.08 OF
POW02026 No alias RNA polymerase, alpha subunit;RNA polymerase Rpb1,... 0.05 OF
POW18023 No alias RNA polymerase Rpb1, domain 1;RNA polymerase Rpb1,... 0.02 OF
SPBC28F2.12.1 No alias RNA polymerase II large subunit Rpb1... 0.04 OF
SPBC651.08c.1 No alias DNA-directed RNA polymerase III complex large subunit... 0.08 OF
YDL140C No alias RNA polymerase II largest subunit B220; part of central... 0.08 OF
YOR116C No alias RNA polymerase III largest subunit C160; part of core... 0.07 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000684 RNA_pol_II_repeat_euk 1645 1658
IPR000684 RNA_pol_II_repeat_euk 1734 1745
IPR000684 RNA_pol_II_repeat_euk 1586 1599
IPR000684 RNA_pol_II_repeat_euk 1558 1569
IPR000684 RNA_pol_II_repeat_euk 1704 1718
IPR000684 RNA_pol_II_repeat_euk 1690 1702
IPR000684 RNA_pol_II_repeat_euk 1631 1644
IPR000684 RNA_pol_II_repeat_euk 1573 1583
IPR000684 RNA_pol_II_repeat_euk 1659 1672
IPR000684 RNA_pol_II_repeat_euk 1602 1613
IPR000684 RNA_pol_II_repeat_euk 1615 1627
IPR000684 RNA_pol_II_repeat_euk 1728 1740
IPR000684 RNA_pol_II_repeat_euk 1673 1692
IPR007081 RNA_pol_Rpb1_5 826 1420
IPR007080 RNA_pol_Rpb1_1 14 354
IPR007075 RNA_pol_Rpb1_6 892 1075
IPR007073 RNA_pol_Rpb1_7 1160 1293
IPR000722 RNA_pol_asu 356 521
IPR007083 RNA_pol_Rpb1_4 715 819
IPR007066 RNA_pol_Rpb1_3 524 688
No external refs found!