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  5. YGR116W

YGR116W


Description : Nucleosome remodeling protein; functions in various aspects of transcription, chromatin maintenance, and RNA processing; required for the maintenance of chromatin structure during transcription in order to inhibit transcription from promoters within the coding region; required for H3K36 trimethylation but not dimethylation by Set2p [Source:SGD;Acc:S000003348]


Gene families : OG_03_0002299 (OF) Phylogenetic Tree(s): OG0002299_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: YGR116W
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AFR93450 No alias transcription elongation factor SPT6;HHH... 0.06 OF
AOA69963 No alias Helix-turn-helix DNA-binding domain of Spt6 0.15 OF
CAG82593 No alias Spt6, SH2 domain 0.05 OF
CAK40869 No alias HHH domain 0.08 OF
CBF82740 No alias Transcription elongation factor spt6 0.06 OF
EAA29618 No alias S1 domain 0.1 OF
EAL92977 No alias transcription elongation factor SPT6, putative 0.06 OF
EAU88502 No alias transcription elongation factor SPT6 0.03 OF
EGR50631 No alias Spt6 acidic, N-terminal domain 0.11 OF
ESU16548 No alias transcription elongation factor SPT6 0.08 OF
KHC72099 No alias transcription elongation factor SPT6;Acidic N-terminal... 0.07 OF
MGG_11491T0 No alias Transcription elongation factor SPT6... 0.08 OF
POW06379 No alias HHH domain 9;Spt6 acidic, N-terminal... 0.03 OF
SPAC1F7.01c.1 No alias nucleosome remodeling protein Spt6... 0.12 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR028088 Spt6_HTH_DNA-bd_dom 338 445
IPR028231 Spt6_YqgF 744 895
IPR028083 Spt6_acidic_N_dom 38 128
IPR032706 Spt6_HHH 897 1000
IPR035420 Spt6_SH2 1225 1436
No external refs found!