Description : pre-mRNA splicing factor (Prp8), putative
Gene families : OG_03_0001356 (OF) Phylogenetic Tree(s): OG0001356_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: EAL87400 | |
Cluster | HCCA: Cluster_75 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AFR92284 | No alias | pre-mRNA-processing-splicing factor 8;RNA recognition... | 0.03 | OF | |
AOA68888 | No alias | RNA recognition motif, spliceosomal PrP8 | 0.1 | OF | |
CAG81996 | No alias | PROCN domain | 0.12 | OF | |
CAK39557 | No alias | RNA recognition motif of the spliceosomal PrP8 | 0.07 | OF | |
CBF77331 | No alias | MRNA splicing protein PRP8 | 0.08 | OF | |
EAA33717 | No alias | PROCT domain | 0.12 | OF | |
EAU86045 | No alias | pre-mRNA-processing-splicing factor | 0.04 | OF | |
EDO00734 | No alias | PROCT domain | 0.09 | OF | |
EDO00735 | No alias | PROCN domain | 0.11 | OF | |
EGR48671 | No alias | PRO8NT domain | 0.1 | OF | |
EJF57100 | No alias | PROCN (NUC071) domain | 0.04 | OF | |
ESU07986 | No alias | pre-mRNA-processing-splicing factor 8 | 0.11 | OF | |
KHC70723 | No alias | pre-mRNA-processing factor 8;PROCN (NUC071)... | 0.09 | OF | |
MGG_05244T0 | No alias | Pre-mRNA-processing-splicing factor 8... | 0.1 | OF | |
POV99819 | No alias | PROCN domain | 0.04 | OF | |
POW11326 | No alias | PRO8NT domain;PROCN domain | 0.02 | OF | |
SPAC4F8.12c.1 | No alias | U5 snRNP complex subunit Spp42 [Source:PomBase;Acc:SPAC4F8.12c] | 0.1 | OF | |
YHR165C | No alias | Component of U4/U6-U5 snRNP complex; involved in second... | 0.1 | OF |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000398 | mRNA splicing, via spliceosome | IEA | Interproscan |
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003723 | RNA binding | IEA | Interproscan |
MF | GO:0004519 | endonuclease activity | IEA | Interproscan |
MF | GO:0017070 | U6 snRNA binding | IEA | Interproscan |
MF | GO:0030623 | U5 snRNA binding | IEA | Interproscan |
BP | GO:0030908 | protein splicing | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR019580 | Prp8_U6-snRNA-bd | 2318 | 2435 |
IPR019580 | Prp8_U6-snRNA-bd | 1458 | 1522 |
IPR021983 | PRP8_domainIV | 2597 | 2824 |
IPR007869 | Homing_endonuc_PI-Sce | 2196 | 2260 |
IPR012592 | PROCN | 413 | 817 |
IPR019581 | Prp8_U5-snRNA-bd | 1226 | 1359 |
IPR007868 | Hom_end_hint | 1523 | 1597 |
IPR012591 | PRO8NT | 67 | 218 |
IPR012984 | PROCT | 3047 | 3167 |
IPR019582 | RRM_spliceosomal_PrP8 | 1002 | 1092 |
No external refs found! |