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  5. YER172C

YER172C


Description : RNA-dependent ATPase RNA helicase (DEIH box); required for disruption of U4/U6 base-pairing in native snRNPs to activate the spliceosome for catalysis; homologous to human U5-200kD [Source:SGD;Acc:S000000974]


Gene families : OG_03_0000272 (OF) Phylogenetic Tree(s): OG0000272_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: YER172C
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AFR95870 No alias pre-mRNA-splicing helicase BRR2;Sec63 Brl... 0.1 OF
AFR97124 No alias RNA helicase;Sec63 Brl domain;Helicase conserved... 0.06 OF
AOA66029 No alias DEAD/DEAH box helicase domain 0.18 OF
CAG78485 No alias DEAD/DEAH box helicase domain 0.13 OF
CAK47061 No alias DEAD/DEAH box helicase 0.07 OF
CBF84947 No alias pre-mRNA splicing helicase, putative 0.14 OF
CBF86944 No alias DEAD/DEAH box helicase, putative 0.1 OF
EAA36222 No alias DEAD/DEAH box helicase domain 0.15 OF
EAL84455 No alias DEAD/DEAH box helicase, putative 0.17 OF
EAL85242 No alias pre-mRNA splicing helicase, putative 0.2 OF
EAU82983 No alias DNA polymerase theta/eta 0.06 OF
EAU82984 No alias pre-mRNA splicing factor 0.03 OF
EDN98214 No alias Helicase, C-terminal 0.01 OF
EDO01959 No alias Sec63 domain 0.13 OF
EGR47626 No alias DEAD/DEAH box helicase domain 0.2 OF
EGR51750 No alias DEAD/DEAH box helicase domain 0.03 OF
EJF58137 No alias N-terminal helicase PWI domain 0.08 OF
ESU06499 No alias Brr2, N-terminal helicase PWI domain 0.11 OF
KHC75382 No alias hypothetical protein;Helicase conserved C-terminal... 0.16 OF
KHC76781 No alias pre-mRNA-splicing helicase BRR2;Sec63 Brl... 0.24 OF
MGG_15536T0 No alias Putative uncharacterized protein... 0.12 OF
POV98191 No alias Sec63 domain;DEAD/DEAH box helicase domain 0.07 OF
POW12741 No alias Brr2, N-terminal helicase PWI domain;Helicase,... 0.01 OF
SPAC9.03c.1 No alias U5 snRNP complex subunit Brr2 [Source:PomBase;Acc:SPAC9.03c] 0.26 OF
SPBC13G1.10c.1 No alias ATP-dependent RNA helicase Slh1, human ASCC3 ortholog... 0.23 OF

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004179 Sec63-dom 998 1306
IPR004179 Sec63-dom 1848 2158
IPR011545 DEAD/DEAH_box_helicase_dom 1350 1515
IPR011545 DEAD/DEAH_box_helicase_dom 501 677
IPR041094 Brr2_helicase_PWI 281 388
IPR001650 Helicase_C 727 877
No external refs found!