Description : DNA repair ligase Lig4 [Source:PomBase;Acc:SPCC1183.05c]

Gene families : OG_03_0002010 (OF) Phylogenetic Tree(s): OG0002010_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: SPCC1183.05c.1
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AOA69231 No alias DNA ligase, ATP-dependent, central 0.07 OF
CAG81303 No alias DNA ligase, ATP-dependent, C-terminal 0.03 OF
EAL91408 No alias DNA ligase, putative 0.03 OF
EDO00868 No alias BRCT domain 0.02 OF
EGR50407 No alias DNA ligase IV domain 0.01 OF
MGG_12899T0 No alias DNA ligase 4 [Source:UniProtKB/TrEMBL;Acc:G4N5E4] 0.03 OF
POW05160 No alias BRCT domain;BRCT domain;DNA ligase, ATP-dependent,... 0.02 OF
YOR005C No alias DNA ligase required for nonhomologous end-joining... 0.03 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012310 DNA_ligase_ATP-dep_cent 254 462
IPR012308 DNA_ligase_ATP-dep_N 25 212
IPR012309 DNA_ligase_ATP-dep_C 488 603
No external refs found!