AOA68249


Description : RNA helicase UPF1, UPF2-interacting domain


Gene families : OG_03_0000143 (OF) Phylogenetic Tree(s): OG0000143_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AOA68249
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AFR94410 No alias DNA helicase;AAA domain 0.06 OF
EAL90638 No alias regulator of nonsense transcripts, putative 0.03 OF
EDN91568 No alias DNA2/NAM7 helicase-like, AAA domain 0.01 OF
EDO00248 No alias DNA2/NAM7 helicase-like, AAA domain 0.02 OF
KHC70522 No alias hypothetical protein;AAA domain 0.13 OF
MGG_00976T0 No alias Regulator-nonsense transcripts 1... 0.05 OF
SPAC16C9.06c.1 No alias ATP-dependent RNA helicase Upf1 [Source:PomBase;Acc:SPAC16C9.06c] 0.06 OF
YMR080C No alias ATP-dependent RNA helicase of the SFI superfamily;... 0.05 OF

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR040812 DUF5599 255 346
IPR041679 DNA2/NAM7-like_AAA 611 807
IPR041677 DNA2/NAM7_AAA_11 505 601
IPR041677 DNA2/NAM7_AAA_11 401 499
IPR018999 RNA-helicase_UPF1_UPF2-interct 55 201
No external refs found!