- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.23 | 1.35 | 1.01 | -1.55 | -1.46 | -1.31 | -1.39 | -1.22 | -1.4 | -1.7 | -1.65 | -2.48 | -1.03 | 2.21 | -1.32 | 2.0 | -0.99 | 2.47 | 0.07 | -0.57 | 0.94 | -1.63 | -1.55 | -1.82 | -2.73 | -2.13 | -0.17 | -1.39 | -0.6 | -0.37 | -0.84 | 2.38 | -0.03 | 1.44 | -0.76 | -0.6 | 0.88 | -0.4 | -1.25 | 0.89 | -1.36 | 0.47 | -0.93 | -1.12 | 2.22 | -1.85 | -1.2 | -2.59 | -2.44 | -5.36 | -2.56 | -5.38 | -1.16 | 0.25 | -1.76 | -0.92 | -0.54 | -2.63 | -0.62 | -0.87 | 0.48 | -2.35 | -0.78 | |
| 0.53 | 1.51 | 1.53 | 1.56 | -0.79 | -1.19 | -1.51 | -1.62 | -1.28 | -2.19 | -0.77 | -3.72 | -2.64 | 2.51 | -2.65 | 2.63 | -2.6 | 2.75 | -2.95 | -1.25 | 0.92 | -4.22 | -2.84 | -3.68 | -2.44 | -3.85 | 0.87 | -2.79 | -2.84 | -2.44 | -2.6 | 3.05 | -1.74 | 1.23 | -2.82 | -2.58 | -1.03 | -2.95 | -2.13 | 0.15 | -2.75 | -0.34 | -3.33 | -2.82 | 2.64 | -2.45 | -2.52 | -2.63 | -2.81 | -6.29 | -1.02 | -4.51 | -2.97 | -0.31 | -1.92 | -2.61 | -1.05 | -2.72 | -2.54 | -1.72 | -1.87 | -1.34 | -1.33 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.