Heatmap: Cluster_62 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
-0.84 -0.5 -0.45 -0.38 0.86 0.68 0.63 0.83 1.24 1.29 -0.12 -0.47 -0.95 -1.54 -0.98 -1.4 -1.02 -1.32 -1.06 -1.35 1.15 0.07 0.16 1.27 -0.09 1.15 0.11 0.43 -0.54 -0.54 -1.22 -1.46 -0.92 0.26 -0.53 -0.56 -0.52 1.87 -0.77 -1.48 1.23 -2.03 -0.58 -1.14 -1.29 -0.2 -0.21 -0.03 -1.97 -1.18 -0.73 -0.86 -0.46 -0.84 -0.31 0.83 1.31 0.26 1.18 -0.15 -1.91 -0.58 -1.86
-0.43 -0.34 -0.5 -0.38 -0.6 -1.04 -0.12 0.1 0.03 -0.78 0.2 0.06 -1.16 -1.11 -0.28 -0.9 -1.7 -0.9 -1.66 2.03 -1.17 - - - - - -0.59 0.96 -0.67 -1.77 -2.11 0.11 2.15 -0.43 -1.71 -0.93 0.77 -0.2 0.96 0.26 0.41 -0.74 -0.74 -0.52 1.07 1.35 1.69 1.25 -0.15 -2.52 1.24 0.28 -0.72 -0.06 0.97 -0.83 0.09 -0.51 - 0.06 -1.13 0.87 0.27
-0.35 -0.42 -0.3 -0.24 0.26 0.17 0.71 0.23 0.29 0.18 -0.54 -0.36 -0.57 -0.82 -0.72 -0.86 -0.7 -0.87 -0.52 -0.39 0.58 -0.55 -0.76 -0.48 -0.2 -0.39 -0.24 1.42 -0.31 -0.13 -0.54 -0.91 -0.44 0.4 -0.24 -0.19 -0.41 1.68 -0.11 -0.53 0.78 -0.62 -0.37 -0.59 -0.84 1.12 1.33 1.19 -2.61 -2.61 -1.63 -1.55 -0.35 -1.85 -0.03 1.72 0.62 -0.12 0.37 0.13 -0.36 -0.14 -0.48
-0.53 1.18 0.2 - - - - - - - - - 1.54 1.24 - 2.22 - - - - - - - - - - - - - 1.42 - 0.34 - - - 1.38 1.35 - - - - - - 1.05 0.38 - - - 0.55 1.18 4.62 2.4 -0.81 1.25 - - - - - - - - -
-0.2 0.64 0.48 0.02 0.62 1.28 0.32 1.02 0.86 0.87 -1.21 0.05 -0.04 0.57 0.04 0.4 -0.01 0.72 -0.1 -0.49 0.41 -1.0 -0.89 -1.75 -2.54 -1.12 0.31 -0.25 -0.19 0.28 0.05 0.71 -0.36 0.01 -0.06 0.12 -0.06 0.99 0.23 0.22 -0.55 -0.49 -0.2 0.09 1.15 -0.77 0.09 -0.67 -1.98 -2.85 -1.99 -2.32 0.13 -0.0 -0.26 0.42 0.39 -0.79 -0.73 -0.7 -1.23 -1.05 -0.93
0.06 1.22 0.93 -0.8 0.38 1.14 0.05 0.77 0.78 0.58 -0.84 -0.6 -1.25 0.01 -1.1 -0.08 -1.0 -0.24 -1.06 -0.09 0.37 -0.07 0.04 -0.89 -0.64 -0.7 0.48 0.15 -0.64 -0.48 -1.1 -0.04 0.18 0.24 -0.53 -0.39 -0.51 1.31 0.46 0.42 0.51 0.32 -0.57 -1.13 -0.04 -0.14 0.18 0.22 -2.15 -3.49 -1.1 -2.22 -0.52 -0.85 0.17 0.41 0.22 0.45 -0.13 0.41 0.13 0.56 -0.34
1.07 -0.36 0.27 -0.17 -1.03 -0.83 -1.7 -0.38 -0.71 -0.68 -0.71 -1.59 -1.03 0.59 -0.86 0.6 -0.39 -0.49 -1.02 1.38 -0.55 - - - - - 0.03 1.04 -0.37 0.47 -0.79 0.55 1.21 0.38 0.3 0.25 0.96 0.81 0.75 0.23 0.39 0.97 -1.36 -0.59 0.82 1.08 1.13 1.06 -2.42 - -4.4 - -1.28 0.27 0.18 0.58 0.11 0.21 -0.58 0.48 -0.41 0.68 -0.04
-0.32 0.47 0.45 -1.36 -0.38 0.18 -0.14 -0.45 0.14 0.25 -0.56 -0.1 -0.84 -2.06 -0.86 -1.95 -0.87 -1.96 -0.84 0.01 0.82 -0.43 -0.76 0.16 -0.46 0.09 0.5 1.68 -0.67 -0.69 -0.73 -2.1 -0.17 1.67 -0.68 -0.63 -0.6 0.25 -0.62 -0.26 1.19 -0.48 -0.67 -0.88 -2.01 -0.11 0.77 0.76 -3.72 -0.46 -0.08 0.18 -0.63 -1.4 0.36 0.5 1.32 0.48 1.52 -0.43 0.39 -0.26 0.33
-0.12 -0.6 -0.47 -0.03 0.4 0.46 0.58 0.46 0.4 0.35 -0.72 -0.28 -0.58 -0.39 -0.5 -0.22 -0.48 -0.5 -0.5 -0.05 0.33 -1.07 -0.88 -0.67 -0.39 -0.59 0.27 1.41 -0.32 -0.26 -0.5 -0.48 -0.06 0.2 -0.41 -0.26 -0.12 1.36 -0.16 -0.29 -0.02 -0.25 -0.15 -0.66 -0.26 0.85 1.79 1.55 -3.15 -3.66 -0.69 -2.39 -0.15 -0.84 -0.27 1.24 0.16 -0.23 -0.42 -0.24 -0.45 -0.2 -0.61
-1.14 -0.75 -0.92 -0.77 0.0 0.53 -0.64 0.09 0.05 0.24 0.17 -1.49 -1.17 -1.39 -1.15 -0.5 -1.01 -1.37 -1.14 1.16 0.5 1.33 -0.16 -1.81 0.36 -1.98 0.71 -0.25 -0.8 -0.91 -1.87 -0.59 1.61 0.73 -0.88 -0.68 -1.21 0.3 1.57 0.2 1.31 0.15 -1.09 -1.58 -1.17 -0.1 0.01 -0.28 -0.2 -1.28 -0.71 -1.01 -1.06 -0.59 0.98 -0.8 -0.12 1.46 -0.02 1.42 -0.53 1.13 -0.45
-2.67 -0.6 -0.68 -3.6 -0.7 1.28 -0.14 0.41 0.52 0.11 -0.44 -3.13 -3.04 -1.99 -2.83 -1.97 -3.06 -1.78 -3.29 -0.01 1.1 -1.15 -1.83 0.05 -1.65 0.19 1.58 1.9 -2.52 -2.23 -2.6 -1.88 0.05 1.6 -2.56 -2.07 -2.2 0.62 0.21 0.27 1.63 0.16 -1.61 -2.8 -1.81 0.28 1.53 1.05 -3.63 -2.24 -1.2 -1.04 -2.4 -2.25 0.98 1.24 1.12 0.96 1.15 0.46 0.21 0.65 0.62
-3.2 -1.56 -1.98 -2.97 -1.56 -0.12 -2.0 -0.58 -0.78 0.48 0.35 -4.36 -3.9 -0.46 -3.6 -0.81 -4.17 -0.85 -3.52 0.77 0.42 - - - - - -0.91 2.06 -4.48 -3.9 -4.41 -0.76 0.91 -0.87 -3.49 -3.6 -3.63 0.15 0.87 -0.19 2.36 0.85 -4.68 -4.75 -0.46 2.92 2.36 2.86 -4.45 -7.25 -6.13 -4.55 -4.12 -2.81 -0.12 1.73 -0.0 0.28 0.76 0.34 -1.03 0.55 -2.31
-1.66 -0.4 -1.09 -0.34 -0.82 0.54 -1.33 0.47 -0.31 0.8 0.42 -1.86 -2.24 -0.0 -2.36 0.58 -1.45 -0.41 -2.75 0.98 0.65 -0.79 0.1 -2.25 -0.42 -1.01 -1.04 0.57 -1.62 -1.11 -2.17 0.69 1.51 -0.97 -2.12 -1.15 -1.25 -0.83 1.33 0.37 2.07 1.04 -2.08 -2.53 0.66 1.2 0.57 1.06 -4.64 -5.59 -2.28 -2.57 -2.18 -1.78 0.82 0.9 0.75 1.05 0.56 0.54 -0.01 0.88 -1.8
-2.4 -2.27 -2.58 -2.47 -0.16 0.62 -0.44 0.83 0.07 1.9 0.46 -2.53 -2.14 -0.65 -1.96 -0.73 -2.09 -0.98 -1.92 0.82 1.16 -2.4 -2.1 -2.47 -3.31 -1.24 -0.74 1.14 -2.1 -1.83 -1.95 -0.93 1.25 -0.37 -1.94 -1.76 -2.23 -0.71 1.36 -0.3 2.16 -0.12 -1.9 -2.16 -0.9 1.34 1.51 1.55 -2.72 -3.56 -3.84 -3.3 -1.96 -2.75 0.73 1.76 1.03 0.86 1.35 1.13 -1.17 0.34 -2.0
-1.22 -0.15 -1.02 -3.13 -1.41 -0.6 -1.68 -0.46 -0.51 1.31 1.3 -2.09 -2.53 -1.26 -2.96 -1.06 -2.78 -1.04 -2.24 -0.28 1.66 0.77 0.91 -1.6 -2.76 -0.25 -0.91 1.39 -1.6 -1.43 -2.96 -0.7 -0.53 0.92 -1.56 -1.23 -1.21 -0.01 0.42 -0.09 1.36 -0.27 -2.67 -2.54 -0.88 1.21 1.4 1.47 -4.32 -5.69 -4.03 -5.3 -2.34 -1.31 0.52 2.44 1.29 0.49 1.97 -0.23 -0.73 0.0 -0.58
-4.2 -2.26 -2.58 -2.83 0.13 1.01 -0.01 0.88 0.86 2.6 1.15 -3.72 -4.19 -3.54 -3.03 -3.59 -4.15 -3.83 -3.45 -2.29 2.43 -1.44 -0.95 -1.07 -3.39 0.16 -0.11 1.5 -3.67 -2.98 -4.19 -3.32 -2.67 1.65 -3.83 -3.13 -3.49 -1.85 -0.26 -1.84 2.81 -1.68 -4.34 -4.44 -3.98 -0.57 0.56 0.16 -3.94 -2.25 -4.12 -1.87 -3.26 -4.7 -0.02 1.79 2.29 -0.2 2.45 -1.91 -2.6 -0.37 -2.66
-2.06 -1.05 -1.6 -1.06 -1.35 0.63 -1.93 0.15 -0.62 1.9 -0.19 -2.41 -1.4 0.36 -1.57 0.17 -1.53 0.29 -1.15 -0.13 1.48 - - - - - 0.32 1.32 -2.33 -1.47 -2.68 0.9 -1.43 0.36 -2.53 -1.44 -1.02 -0.06 1.12 0.45 1.1 0.61 -2.1 -1.52 0.9 0.43 0.69 0.94 -1.98 -1.82 -0.71 -0.84 -2.35 0.64 0.97 2.1 1.42 -0.87 1.6 -0.99 -0.59 0.51 -0.33
-1.42 0.35 0.48 0.81 0.68 1.06 1.89 0.91 0.72 0.62 -0.82 -1.85 -0.96 -0.02 -0.78 0.27 -1.22 0.24 -2.05 -1.61 0.58 -1.71 -1.0 0.78 0.04 0.45 1.73 2.68 -1.33 -1.47 -1.85 0.35 -0.89 1.4 -1.63 -1.71 -2.0 -2.93 -2.87 -0.64 1.45 -0.89 -0.74 -1.51 0.01 -1.87 0.14 -0.19 -1.0 -3.67 -0.58 -3.03 -0.53 -2.12 -2.51 0.51 -0.81 -2.22 0.38 -2.69 -0.13 -2.67 0.42
-0.46 0.82 0.52 -0.58 0.51 0.82 0.86 1.08 1.19 1.1 0.03 -0.14 -0.2 -4.05 -0.19 0.21 -1.15 -2.5 -0.21 0.37 0.7 - - - - - 0.76 0.02 -0.26 -1.59 -2.3 0.68 -0.05 0.72 -1.36 -0.3 0.56 0.68 -0.04 -0.19 1.22 -1.37 -1.21 -1.68 0.23 -0.17 0.39 1.13 -2.18 -3.14 -3.28 -2.33 -0.62 0.52 1.17 -0.71 0.75 -0.42 0.28 0.45 -1.02 0.75 0.45
-1.1 -0.75 -0.73 0.31 -2.3 -0.67 -1.77 -1.18 -1.93 -1.32 -1.72 -1.58 -1.26 0.11 -1.63 0.41 -2.18 -0.09 -1.18 0.98 -0.65 -0.36 -1.69 -2.21 -1.16 -1.69 -0.94 0.72 -1.24 -0.8 -1.18 0.28 1.54 -1.02 -0.75 -0.6 -0.83 2.41 1.0 0.17 0.81 0.05 -2.07 -1.51 0.37 1.0 0.88 0.35 - - -5.95 -4.58 -1.44 1.1 0.59 1.46 -0.72 1.31 -1.09 1.71 0.9 1.15 0.85
-0.62 -0.36 -0.05 -1.5 -0.53 0.59 -0.08 0.47 -0.23 0.57 0.09 -0.83 -1.27 -1.49 -1.3 -1.32 -1.15 -1.33 -1.11 0.99 0.55 -0.65 -0.9 -0.73 -1.18 -1.62 0.28 0.45 -1.02 -0.71 -1.06 -1.23 1.73 -0.41 -0.94 -0.67 -0.77 0.89 0.84 0.09 1.53 -0.21 -0.87 -1.18 -1.32 0.42 0.49 0.97 -3.12 -3.04 -0.03 -1.5 -0.93 -1.79 0.82 0.85 0.69 1.17 0.18 1.5 0.37 0.82 0.12
-0.69 -0.1 -0.16 -1.4 -0.48 0.73 -0.71 -0.65 -0.06 1.02 0.83 -1.0 -1.1 0.19 -1.22 0.09 -1.04 0.19 -1.08 0.0 0.9 -0.18 -0.43 -0.99 -1.01 -0.8 0.36 0.85 -1.0 -0.79 -1.21 -0.06 0.49 -0.05 -0.92 -0.89 -1.0 0.07 0.88 0.19 2.01 -0.02 -1.12 -1.15 0.12 0.4 0.25 0.42 -2.74 -2.9 -2.1 -2.47 -1.05 -0.9 0.71 0.99 0.94 0.6 1.16 0.59 -0.31 0.52 -0.19
0.28 -1.46 0.71 1.41 -0.88 -0.26 -0.54 -0.68 -1.18 -1.62 -2.21 0.75 -0.39 2.05 -1.1 -0.85 -1.65 - -0.06 0.92 -0.71 - - - - - -0.48 -0.31 0.38 0.52 - 0.3 0.88 -0.12 -0.67 -0.19 0.18 - 0.89 - 0.62 -0.11 0.14 0.66 0.32 2.28 1.06 2.29 -0.52 -0.89 1.38 -2.25 -1.47 - 0.31 0.22 -0.67 -0.77 -0.77 -0.11 - -0.09 -0.68
-0.33 -0.0 -0.11 -0.17 -0.03 -0.08 -0.73 -0.07 0.34 0.15 -0.21 -0.49 -0.65 -0.44 -0.65 -0.45 -0.61 -0.36 -0.6 0.31 -0.11 0.02 -0.12 -0.14 -0.32 -0.12 0.3 1.02 -0.47 -0.45 -0.57 -0.48 0.45 -0.12 -0.48 -0.47 -0.28 0.7 0.32 -0.23 0.36 -0.11 -0.43 -0.62 -0.46 1.16 1.16 1.28 -2.1 -1.42 0.01 -1.18 -0.39 -0.56 0.18 1.39 -0.12 0.42 -0.01 0.5 -0.32 0.45 -0.52
-0.62 0.55 0.44 -0.5 -0.16 0.41 -1.15 -0.04 0.7 0.23 -0.5 -0.51 -0.87 -1.99 -1.05 -1.9 -0.82 -1.7 -1.02 -0.12 0.32 0.32 -0.39 0.7 -0.59 0.31 0.62 1.22 -0.5 -0.36 -0.84 -1.5 -0.47 0.79 -0.51 -0.38 -0.4 -0.33 -0.04 -1.37 1.76 -1.45 -0.6 -0.92 -1.54 0.04 1.62 1.53 -2.87 -0.68 0.06 -0.23 -0.34 -1.47 0.43 1.25 0.47 0.53 0.26 0.16 -1.36 0.53 -1.21
-0.44 0.22 0.41 -0.33 0.52 1.15 0.86 0.49 0.43 0.35 0.13 -0.73 -0.69 -1.41 -0.75 -1.43 -0.7 -1.32 -0.59 -1.07 0.66 -0.8 -0.82 -0.04 -0.29 0.23 -0.43 1.41 -0.4 -0.42 -0.6 -1.41 -0.49 0.38 -0.48 -0.45 -0.48 0.8 -0.21 -0.31 1.76 -0.58 -0.68 -0.71 -1.45 1.03 1.02 1.18 -2.63 -1.55 -1.31 -1.35 -0.52 -2.42 -0.43 1.06 0.82 -0.14 0.61 0.05 -0.66 -0.17 -0.54
-1.2 -0.52 -0.7 -1.15 -1.02 -0.03 -1.1 0.92 0.25 -0.02 -0.85 -0.78 -0.58 -0.04 -1.27 -0.27 -0.44 0.03 -0.34 0.68 0.47 0.88 0.53 -0.03 0.16 0.22 0.0 0.82 -0.65 -0.44 -0.52 0.01 -0.03 0.92 -0.57 -0.33 -0.55 1.76 0.69 -0.88 -0.15 -0.55 -0.66 -0.73 0.09 -1.22 -1.5 0.27 -3.51 -2.18 -0.82 -1.51 -0.37 0.51 0.94 0.89 0.48 1.04 -0.18 0.62 -0.53 1.04 -0.81
-0.09 0.42 0.23 -1.49 -0.1 0.52 -0.13 0.49 0.47 0.69 0.15 -0.68 -1.11 -1.06 -1.23 -0.62 -1.17 -1.11 -1.05 0.7 0.55 0.97 1.05 -0.02 -0.24 -0.61 0.12 -0.3 -0.42 -0.33 -1.25 -0.76 0.72 0.03 -0.33 -0.33 0.03 0.08 0.55 -0.47 0.32 -0.06 -0.33 -1.27 -0.83 -0.17 0.59 0.42 -6.55 - -5.77 - -0.39 0.17 0.94 1.31 0.62 0.84 -0.19 0.86 -0.0 0.88 -0.17
-0.81 0.19 -0.0 -0.85 0.19 0.68 -0.19 0.57 0.53 0.69 0.02 -0.81 -0.93 -0.19 -0.96 -0.27 -0.93 -0.46 -0.18 -0.31 0.73 0.56 0.34 -0.26 -0.04 -0.27 0.11 0.84 -0.42 -0.26 -1.01 -0.33 0.06 0.49 -0.35 -0.21 -0.35 1.45 -0.08 -0.32 0.87 -0.21 -0.53 -0.9 -0.21 0.5 0.79 0.6 -2.65 -2.72 -1.51 -1.92 -0.55 -0.28 -0.06 0.97 0.72 0.08 0.59 -0.18 -0.54 -0.17 -0.54
-0.69 1.5 1.58 -1.64 -1.0 0.94 -0.64 -0.65 -0.88 0.16 0.5 -2.54 -2.6 -0.25 -2.97 -0.53 -2.83 -0.81 -3.57 0.24 0.07 0.65 -0.37 -1.72 0.57 -1.34 -0.04 1.04 -2.35 -2.25 -2.39 -1.06 0.01 -0.24 -2.23 -2.39 -1.48 0.58 1.16 0.95 0.73 0.89 -2.4 -2.02 -0.58 0.68 0.63 1.13 - - - - -2.05 -1.78 0.93 0.48 0.58 0.5 -0.13 0.62 1.52 1.14 1.73
-1.31 0.3 0.56 -1.01 0.11 1.93 0.41 0.27 0.41 0.95 0.55 -0.72 -1.86 -0.17 -1.56 -0.16 -1.23 -1.39 -1.79 0.34 0.79 -0.77 -1.71 -1.3 0.11 -1.85 0.17 0.42 -1.84 -1.06 -1.17 -0.57 0.14 0.03 -1.44 -0.98 -1.18 0.43 1.42 1.02 0.07 0.42 -1.12 -1.42 -0.21 0.09 0.35 0.74 -3.64 -5.82 -1.79 -5.6 -1.03 -1.22 1.1 0.78 0.91 -0.15 0.2 0.05 0.7 0.28 1.38
-0.57 0.91 0.82 -0.73 -0.67 -0.8 -1.83 -0.91 -0.21 -0.09 -0.66 -0.46 -0.68 -1.1 -0.45 -2.38 -0.15 -2.25 0.2 -0.43 -0.12 -0.0 0.03 -1.06 -0.02 -0.93 -0.43 -0.81 -0.6 -0.77 -0.36 -2.0 -0.79 -0.06 -0.69 -0.38 0.38 -0.5 -1.11 -1.51 0.32 -2.1 -0.91 -0.02 -0.55 -1.71 -1.08 0.55 -0.7 0.53 3.87 1.44 -0.82 -0.2 -0.13 -0.25 0.21 -0.21 -0.12 -1.1 -2.07 0.01 -1.39
-1.63 -0.07 -0.45 -2.44 -0.91 1.24 -2.19 -0.64 0.03 1.18 0.73 -2.06 -2.69 -1.19 -2.69 -1.04 -2.7 -1.34 -2.57 0.65 1.07 1.03 0.56 -2.0 -1.6 -1.93 0.05 0.66 -2.49 -1.92 -2.72 -1.26 1.15 0.1 -2.26 -1.87 -1.35 0.89 0.65 -0.42 2.45 -0.49 -1.97 -2.67 -1.31 0.11 0.63 1.03 -3.03 -0.97 1.25 -2.0 -2.1 -1.07 0.68 0.39 1.47 0.92 1.18 0.65 -0.4 0.28 -0.19
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.