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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.09 | 0.89 | 0.98 | -2.01 | -1.47 | -0.99 | -1.0 | -1.46 | -0.91 | 0.15 | -0.89 | -4.06 | -2.28 | 1.54 | -2.17 | 1.65 | -2.9 | 1.69 | -1.91 | 0.34 | 0.52 | -0.57 | -1.32 | -2.4 | -1.95 | -1.46 | 0.58 | -0.86 | -2.36 | -1.8 | -1.99 | 1.53 | 0.83 | 0.81 | -2.03 | -2.75 | -0.93 | 0.15 | 0.22 | 1.9 | -0.41 | 1.6 | -3.28 | -2.08 | 1.53 | -0.33 | -1.46 | -0.87 | -5.11 | -6.47 | -3.62 | - | -2.39 | -0.96 | -0.39 | 0.0 | 0.65 | -0.08 | 0.17 | 0.64 | 1.76 | -0.22 | 1.21 | |
| -1.74 | -0.86 | -1.09 | -1.92 | -0.61 | -0.11 | -0.89 | -0.36 | -0.14 | 0.26 | -2.67 | -2.94 | -1.92 | 2.3 | -1.83 | 2.24 | -1.87 | 1.57 | -1.54 | -0.3 | 0.13 | -0.84 | -1.69 | -2.58 | -1.89 | -1.95 | 0.59 | -1.07 | -2.41 | -2.27 | -2.0 | 2.4 | -0.13 | 0.28 | -2.43 | -1.81 | -1.71 | -1.18 | 0.13 | 1.43 | -0.77 | 1.44 | -2.0 | -2.14 | 2.38 | -1.6 | -1.72 | -2.76 | -4.56 | - | -4.49 | -5.13 | -1.85 | 1.61 | -0.06 | -0.78 | -0.04 | -0.29 | 0.14 | -0.14 | 1.1 | -0.11 | 1.17 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.