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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -4.33 | -4.59 | -3.01 | -0.25 | 1.3 | 0.89 | -0.4 | 0.72 | 1.31 | 0.75 | -0.35 | 0.19 | 0.2 | 1.07 | 0.21 | 0.28 | 0.33 | 1.09 | 0.87 | -0.12 | -0.7 | -2.04 | -1.69 | -2.69 | -2.44 | -2.08 | -0.31 | -2.45 | 0.77 | 0.51 | 0.5 | 1.39 | 0.15 | -1.85 | 0.38 | 0.06 | 0.36 | 1.74 | 0.16 | 0.62 | -0.39 | -0.38 | 1.12 | 0.01 | 1.2 | -1.44 | -0.08 | -0.26 | - | -4.61 | - | - | 1.09 | 0.19 | -0.51 | -1.19 | -2.21 | -0.74 | -2.32 | -0.14 | -2.23 | -2.23 | -1.01 | |
| -0.73 | -0.78 | -1.09 | 0.74 | 0.46 | 0.32 | -0.32 | -0.66 | 0.12 | -0.3 | -1.34 | -0.19 | -0.06 | 1.16 | -0.38 | 1.01 | -0.23 | 1.12 | 0.19 | -0.45 | -0.62 | -1.54 | -0.93 | -0.65 | -0.58 | -0.61 | 0.09 | -0.05 | -0.39 | 0.04 | 0.14 | 1.18 | -0.45 | 0.12 | 0.29 | 0.19 | -0.35 | -0.33 | -0.69 | 0.86 | -0.44 | 1.14 | 0.18 | 0.04 | 0.84 | 0.2 | 0.51 | -0.03 | -5.09 | - | -5.6 | -6.24 | 0.35 | 0.37 | -0.97 | 0.69 | -0.01 | -0.74 | -0.84 | 0.04 | 0.38 | -0.08 | 1.06 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.