Heatmap: Cluster_131 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
-1.88 -0.38 -0.61 -1.31 -0.42 0.28 -0.24 -0.42 -0.18 -0.8 0.74 -1.65 -2.22 2.04 -2.33 1.68 -2.17 1.62 -2.19 0.56 0.03 -1.77 -0.96 -0.06 -1.84 -0.27 0.56 0.07 -1.86 -1.83 -2.19 1.58 0.46 -0.58 -1.85 -1.72 -1.97 0.43 0.02 1.06 -0.8 1.62 -1.75 -2.25 1.89 0.5 0.12 0.4 -3.66 -2.92 -1.54 -2.2 -1.7 1.27 -0.46 -0.42 0.0 -0.55 -0.21 -0.23 0.28 -0.13 0.58
-1.46 -1.21 -1.13 -1.7 0.23 0.3 0.16 -0.39 -0.8 -1.19 1.37 -2.27 -1.84 1.06 -1.68 1.02 -1.76 0.83 -1.65 -0.55 0.24 -2.16 -0.82 -1.94 -1.79 -1.21 1.5 -2.06 -1.39 -1.58 -1.51 0.96 -0.2 0.4 -1.57 -1.67 -1.92 -0.72 -0.04 2.23 -0.15 2.07 -1.93 -1.72 0.97 -0.04 -0.94 -0.67 -1.41 -3.93 -2.45 -3.99 -1.93 0.35 -0.89 -1.29 1.05 -0.6 1.15 0.46 2.0 -0.12 1.59
-1.44 -1.21 -1.32 -1.61 -1.66 -1.34 -1.38 -1.81 -2.41 -2.4 0.58 -2.55 -1.79 1.29 -1.61 1.24 -1.7 1.1 -1.66 -0.95 -0.36 -0.01 1.6 -1.34 1.08 -0.73 1.11 -2.89 -1.48 -1.72 -1.66 1.11 -0.58 -0.1 -1.71 -1.65 -2.21 -1.62 -0.59 1.68 0.2 2.36 -1.99 -1.81 1.17 -0.65 -1.51 -1.36 -0.33 -3.23 -0.95 -3.25 -2.07 0.47 -1.35 -1.93 0.37 0.16 0.81 0.84 2.29 0.66 1.43
-1.14 2.84 0.94 -2.96 -3.25 -3.15 -1.55 -2.34 -2.32 -1.94 -2.67 -2.78 -3.75 1.75 -3.73 2.2 -3.7 1.7 -2.08 -0.14 0.59 -2.65 -3.36 1.31 -0.19 0.68 2.02 -2.36 -2.93 -4.27 -4.66 1.39 -0.95 -0.22 -2.8 -2.87 -2.55 -1.53 -2.75 -0.42 0.54 -0.75 -2.91 -4.09 1.82 -3.35 -2.3 -2.75 - -5.52 0.38 -0.91 -2.71 3.44 -1.73 -1.83 -1.91 -1.8 -2.81 -0.66 -1.02 -1.55 -1.15
-8.54 -9.34 -9.4 -6.93 -1.73 1.02 -1.82 0.88 -1.83 -0.92 -4.06 -4.85 -4.48 0.89 -4.43 0.99 -4.55 0.64 -4.71 1.38 -1.8 -8.7 -9.13 -8.65 -7.73 -7.86 2.05 1.54 -5.1 -4.29 -4.54 0.67 1.4 -1.55 -4.79 -4.33 -6.17 -1.4 1.38 0.6 0.95 1.36 -3.63 -4.41 0.74 2.08 1.86 1.94 -6.99 -10.8 -1.87 -7.63 -3.26 -1.03 0.92 0.66 -2.07 0.96 -1.9 1.74 0.64 1.42 -1.19
-1.19 0.07 -0.11 -0.13 -0.86 -0.51 -0.1 -0.57 -0.38 -0.59 0.35 -1.64 -1.42 -0.38 -1.45 0.18 -2.08 -0.12 -1.41 0.19 -0.06 -0.18 0.79 0.52 0.31 0.38 0.69 -0.7 -1.15 -1.12 -1.66 0.01 0.39 -0.1 -1.12 -1.14 -0.83 -0.07 -0.28 0.09 -0.03 0.26 -1.15 -1.84 0.4 -0.33 0.22 -0.34 -4.43 0.41 2.51 1.41 -1.24 -0.94 0.32 0.31 0.58 0.73 -0.13 1.02 -0.22 0.86 -0.02
-0.06 -0.22 0.11 0.97 0.67 0.79 0.47 0.69 0.24 0.5 0.81 -0.77 -1.26 -0.61 -1.11 -0.48 -1.14 -0.56 -0.85 0.32 -0.08 -0.79 0.28 -1.42 -0.97 -0.18 1.24 0.35 -0.35 -0.37 -1.03 -0.77 -0.22 0.06 -0.39 -0.29 -0.19 0.75 0.22 0.37 -0.24 0.16 -0.73 -1.08 -0.68 0.61 0.63 0.32 -2.43 -2.73 -0.43 -3.46 -0.77 -2.15 0.38 0.73 0.42 -0.02 0.19 -0.27 0.77 0.46 1.08
-1.83 -1.29 -1.28 -4.82 -1.06 0.31 -0.73 -0.03 -0.56 -0.09 0.07 -2.1 -2.09 0.56 -2.2 0.54 -1.94 0.61 -1.63 0.88 0.02 -0.42 -0.58 -1.15 -1.16 -1.3 0.73 0.95 -1.49 -1.19 -1.88 0.55 1.01 -0.12 -1.5 -1.34 -1.19 1.11 0.65 1.0 0.29 1.01 -1.36 -2.07 0.64 1.45 1.29 1.41 -6.28 -8.16 -3.49 -5.26 -1.63 0.92 0.65 0.94 0.21 0.32 -0.17 0.58 0.78 0.59 0.6
-0.54 0.34 0.33 -0.2 -0.64 -0.03 -0.39 0.3 -0.43 -0.17 -0.05 -0.85 -1.42 0.56 -1.47 0.42 -1.41 0.38 -1.08 0.07 0.06 -0.12 0.08 -0.21 -0.5 -0.59 0.81 -0.09 -1.1 -0.85 -1.31 0.49 0.14 0.22 -1.02 -0.79 -0.76 0.68 0.22 0.68 0.52 0.56 -0.97 -1.63 0.58 0.28 0.59 0.44 -1.92 -1.76 0.41 -0.4 -0.96 0.94 0.28 0.47 0.41 0.35 0.08 0.57 0.58 0.52 0.37
-0.54 0.08 0.04 -3.01 -2.71 -1.0 -2.68 -1.92 -2.12 -2.11 -0.5 -2.5 -3.02 0.42 -2.96 0.03 -2.81 0.18 -2.09 1.0 -0.88 -0.23 0.11 -2.32 -1.83 -2.59 0.96 0.9 -2.91 -2.8 -2.91 0.4 1.17 -1.38 -2.8 -2.71 -1.12 1.05 0.9 1.63 -0.57 1.87 -2.89 -2.9 0.32 1.76 1.45 1.35 -1.32 -3.26 0.36 -1.83 -2.75 -0.46 0.54 0.78 -0.59 0.49 -0.56 0.82 1.71 0.87 1.15
-0.45 -0.12 -0.08 -0.2 0.01 0.23 0.05 0.03 -0.12 -0.16 0.12 -0.26 -0.75 -0.02 -0.83 -0.1 -0.69 0.18 -0.55 -0.02 0.52 0.64 0.65 0.62 0.75 0.44 0.19 0.24 -0.33 -0.43 -0.61 0.21 -0.14 0.73 -0.28 -0.39 -0.88 0.72 0.21 0.42 0.03 0.52 -0.3 -0.84 0.21 0.43 0.65 0.28 -3.32 -3.36 -1.91 -2.37 -0.26 -1.12 0.21 0.27 0.24 -0.13 0.53 0.15 0.33 0.24 -0.12
-0.9 -0.7 -0.66 -0.38 -0.5 -0.22 -0.5 -0.23 -0.25 -0.41 0.24 -0.38 -0.81 0.52 -0.79 0.45 -0.86 0.35 -0.8 0.15 0.34 0.37 0.56 0.1 0.12 -0.21 0.87 -0.14 -0.53 -0.51 -0.96 0.37 0.46 0.47 -0.58 -0.52 -0.9 1.23 0.04 0.82 0.37 0.97 -0.33 -0.96 0.67 -0.01 0.01 -0.28 -2.86 -3.59 -0.9 -2.87 -0.24 0.52 0.18 0.34 0.31 0.39 0.14 0.38 0.54 0.47 0.23
-0.89 -0.49 -0.55 -1.13 -0.51 -0.1 -0.11 -0.12 -0.54 -0.36 1.19 -1.74 -2.29 1.06 -2.4 0.94 -2.16 0.93 -2.08 -0.47 -0.11 -0.32 -0.29 -0.65 -1.06 -1.43 2.61 0.46 -1.81 -1.69 -2.13 1.01 -0.41 0.22 -1.89 -1.61 -1.08 0.06 -0.45 1.07 0.06 1.09 -1.57 -2.23 1.13 0.68 0.94 0.78 -3.75 -3.13 -1.02 -1.09 -1.83 0.84 -0.5 0.67 0.3 -1.03 0.02 -0.41 0.97 -0.45 0.62
-2.4 -1.66 -1.48 0.17 -1.18 -0.07 0.45 -0.35 -1.07 -1.28 2.13 -3.21 -3.42 0.72 -2.97 0.69 -3.43 0.77 -3.17 -3.09 -0.62 -3.25 -2.83 -1.79 -2.09 -2.11 2.17 0.85 -2.68 -2.69 -3.11 0.86 -1.81 -0.37 -2.81 -2.66 -1.7 -1.95 -1.92 2.06 -0.28 1.91 -3.51 -2.95 0.93 1.65 2.04 1.79 -6.0 -4.1 -1.98 -2.59 -3.42 0.09 -3.77 0.93 -0.36 -2.89 -0.19 -1.9 1.94 -2.68 1.53
-0.45 -0.43 -0.24 -0.0 0.75 -0.21 0.14 0.42 0.18 -0.13 0.19 -0.59 -1.16 0.35 -1.16 0.5 -0.94 0.42 -1.18 0.58 -0.29 -0.16 -0.36 -1.01 -0.46 -0.26 1.65 -0.6 -0.51 -0.69 -1.09 0.73 0.43 0.46 -0.73 -0.65 -0.27 0.37 -0.01 0.92 -1.04 0.99 -0.7 -1.1 0.66 -0.53 -0.2 -0.22 -1.37 -1.61 -2.1 -1.46 -0.66 1.23 0.01 0.8 -0.52 -0.26 -0.71 -0.46 1.27 0.27 0.71
-4.5 -3.01 -3.36 -3.11 -1.39 0.65 -0.66 -0.17 -0.94 -0.52 0.76 -2.81 -2.92 1.7 -2.54 1.58 -2.39 1.5 -2.28 0.63 -0.44 -2.56 -2.83 -3.56 -2.19 -3.32 1.62 0.36 -2.57 -2.37 -2.77 1.52 0.94 -0.77 -2.5 -2.36 -3.29 -0.81 0.7 1.6 -0.32 1.48 -2.63 -2.64 1.64 0.96 1.07 1.26 -1.0 -5.16 -2.85 -4.14 -2.57 0.51 0.44 -0.13 -0.25 -0.34 -0.99 0.44 0.84 0.07 1.56
-2.45 -1.61 -1.5 -1.41 -0.52 0.6 0.17 0.04 -0.74 -0.15 0.51 -1.34 -1.25 1.31 -1.28 1.36 -1.15 1.44 -1.09 0.25 -0.17 -1.79 -1.24 -2.01 -1.13 -2.19 0.57 -0.03 -1.44 -1.21 -1.21 1.33 0.95 -0.7 -1.32 -1.05 -1.8 0.12 0.61 1.02 0.53 1.06 -1.26 -1.14 1.28 0.42 0.56 0.59 0.0 -2.48 -1.04 -2.2 -1.02 0.86 0.0 -0.22 0.16 0.31 -0.06 1.13 0.4 0.25 0.11
-2.59 0.17 -0.33 -2.78 -0.46 0.07 -0.16 -0.25 0.51 -0.41 0.56 -3.15 -3.0 0.31 -2.52 0.28 -3.05 0.27 -2.73 0.1 0.73 -0.67 -0.03 0.67 -0.44 -0.18 1.2 -0.02 -2.53 -2.35 -2.86 0.24 0.16 0.16 -2.64 -2.41 -2.44 1.12 -0.01 1.29 0.12 1.24 -2.68 -3.14 0.47 0.37 0.34 0.22 -4.55 -4.84 -0.39 -2.9 -2.54 1.37 -0.1 0.69 1.11 0.36 0.84 0.4 1.3 0.35 1.57
2.32 1.87 1.66 0.02 -0.56 -0.48 -0.77 0.27 0.71 1.18 -5.03 -0.42 -0.02 0.41 -0.05 0.15 -0.41 -1.0 -0.06 -2.33 -2.37 - - - - - -1.85 -0.49 0.88 0.77 0.51 1.88 -1.95 -1.82 0.89 0.99 2.33 -3.72 -1.43 -2.06 -1.83 -2.07 -1.44 0.03 1.58 -0.6 0.73 0.09 -4.34 -2.83 -1.12 -2.27 -0.9 1.12 -2.05 1.06 -2.48 -2.57 -2.58 -2.35 -2.91 -2.17 -1.51
-1.2 -1.27 -1.28 -0.14 0.39 0.38 0.68 0.26 0.24 -0.11 0.04 -0.45 -0.93 1.25 -0.98 1.01 -0.88 0.96 -0.84 -0.05 0.02 -2.09 -1.72 -0.65 -1.38 -0.45 0.73 -0.07 -0.49 -0.46 -0.91 0.9 0.22 -0.32 -0.54 -0.47 -0.85 1.06 0.16 0.69 -0.25 0.77 -0.49 -0.95 1.11 0.46 0.38 0.55 -2.22 -2.29 -1.1 -1.65 -0.48 0.57 -0.03 0.72 0.15 0.09 -0.37 0.43 0.34 -0.12 0.03
-0.55 -0.12 -0.15 -2.2 0.27 0.45 0.17 0.07 0.08 -0.17 0.51 -0.76 -0.93 0.79 -1.14 0.84 -0.93 0.57 -0.58 -0.08 0.05 -0.63 -0.65 -1.49 -0.98 -1.5 1.12 0.52 -0.57 -0.39 -0.85 0.85 -0.04 0.33 -0.57 -0.49 -0.35 0.34 -0.02 1.21 -0.56 0.97 -0.26 -1.01 0.89 0.75 0.9 1.0 -5.11 -6.28 -4.06 -4.56 -0.42 0.35 -0.11 0.61 0.29 -0.77 -0.16 0.06 0.7 -0.08 0.29
0.25 0.26 0.28 -1.51 0.74 0.73 -0.16 0.3 0.49 -0.26 -0.33 -1.01 -0.53 1.2 -1.24 0.8 -0.7 0.44 -0.01 0.05 0.3 - - - - - 0.13 0.81 0.27 0.38 -0.42 1.69 0.28 0.28 -0.36 0.11 0.05 -2.31 0.45 1.07 -1.03 -0.65 -0.57 -0.27 1.36 1.2 1.14 0.51 -3.92 - - -4.66 -0.74 0.94 0.08 0.72 0.6 -3.53 -0.25 -1.78 -0.43 -0.99 -0.08
-2.04 -1.72 -1.65 0.04 0.05 -0.07 0.07 -0.01 0.15 -0.4 0.22 -1.35 -1.75 1.03 -1.62 0.88 -1.54 0.88 -1.4 0.4 -0.2 -2.2 -1.71 -1.28 -1.55 -1.54 0.64 0.97 -1.22 -1.11 -1.46 0.93 0.84 -0.16 -1.21 -1.24 -1.39 0.32 0.59 1.43 -0.29 1.47 -1.18 -1.6 1.13 1.31 1.4 1.52 -4.84 -4.6 -3.79 -3.87 -1.14 0.55 0.08 0.91 -0.24 -0.44 -0.59 0.04 0.63 -0.02 0.4
-2.1 -1.87 -1.71 0.18 0.14 -0.46 -0.23 -0.19 -0.26 -1.0 0.53 -1.4 -1.86 1.53 -1.87 1.52 -1.65 1.58 -1.68 -0.17 -0.61 -2.75 -2.01 -2.3 -1.95 -1.21 1.41 -0.7 -1.47 -1.49 -1.82 1.49 0.51 -0.24 -1.51 -1.48 -2.08 0.2 0.16 1.81 -0.63 2.05 -1.32 -1.8 1.64 0.18 0.05 0.03 -2.64 -3.15 -2.55 -1.77 -1.35 1.73 -0.31 0.06 -0.28 -0.88 -0.62 -0.16 1.24 -0.33 0.46
-1.13 -0.88 -0.58 -0.43 -0.96 -0.19 -1.52 -0.99 -0.63 -0.69 0.63 -0.88 -0.9 0.05 -0.98 -0.0 -0.94 -0.04 -0.91 0.66 -0.21 -0.62 0.04 -1.34 -0.59 -0.84 0.79 0.58 -0.68 -0.42 -1.09 0.09 0.79 0.13 -0.7 -0.58 -0.98 0.36 0.69 0.66 0.97 1.22 -0.82 -0.94 0.06 1.4 1.31 1.19 -2.43 -3.54 -1.87 -2.02 -0.91 -0.74 0.58 0.38 0.06 0.62 -0.07 1.03 0.74 1.06 0.1
-3.27 -1.41 -1.83 -4.7 -1.18 0.03 -2.05 -1.4 -0.96 -1.03 0.81 -2.61 -2.47 0.92 -2.71 0.88 -2.43 1.1 -2.56 0.5 -0.26 -0.84 -1.22 -1.75 -2.29 -2.12 1.81 0.68 -2.34 -2.16 -2.27 1.06 0.75 -0.2 -2.27 -2.15 -2.67 0.83 0.4 1.39 0.59 1.16 -2.68 -2.49 1.14 1.33 1.75 1.52 -4.89 -10.17 -3.67 -6.36 -2.73 0.26 -0.16 1.18 0.09 0.16 -0.01 0.25 1.24 0.35 1.21
-2.01 -0.5 -0.56 -1.16 0.32 1.0 -0.39 0.33 1.06 0.81 1.48 -2.51 -2.48 0.3 -2.22 0.33 -2.31 0.21 -2.27 0.21 0.35 -0.77 -0.12 -0.39 -0.65 -0.76 1.71 0.23 -2.05 -1.83 -2.22 0.61 -0.14 1.1 -2.07 -1.93 -1.71 -0.58 -0.28 1.03 0.03 1.2 -1.96 -2.37 0.58 0.08 1.3 0.55 -3.59 -2.72 -1.55 -1.11 -1.85 0.74 -0.22 0.55 0.8 -0.64 0.61 -0.69 0.59 -0.08 0.86
-1.2 -1.21 -1.02 0.45 0.47 0.38 0.57 -0.44 0.64 0.23 -0.4 -0.15 -0.47 0.74 -0.51 0.76 -0.36 0.66 -0.28 -0.21 0.17 -1.63 -1.29 0.39 -0.19 0.8 0.52 0.34 -0.16 -0.17 -0.33 0.73 0.44 -0.17 -0.19 -0.18 -0.63 0.2 -0.36 0.33 -0.26 -0.16 -0.08 -0.36 0.74 0.83 0.83 0.52 -3.69 -2.7 -0.91 -1.09 -0.13 0.45 -0.9 0.99 -0.16 -0.63 -0.52 -0.02 -0.27 -0.81 -0.31
-0.75 2.03 1.65 -2.88 -2.07 -1.8 -1.6 -2.02 -0.65 -1.35 -2.59 -4.02 -4.66 0.64 -1.48 1.03 -3.03 1.45 -2.26 0.27 0.49 0.46 0.53 1.2 -0.55 -0.73 0.1 -3.28 -3.16 - - 1.47 -1.09 -0.08 -4.16 -4.23 -1.66 -0.25 -1.08 1.8 - 1.1 -2.83 -2.58 1.52 -3.26 - -2.26 -3.07 - -3.58 -4.22 -2.63 -1.47 0.16 0.26 0.83 -0.17 1.14 0.14 2.15 -0.05 2.55
-2.54 -1.2 -0.59 -1.59 -2.04 -1.92 -1.89 -1.83 -1.31 -1.79 0.65 -3.74 -2.28 0.16 -4.96 0.72 -2.75 0.56 -3.08 1.04 1.08 -0.21 0.19 -0.61 -1.18 -1.24 1.75 -0.25 -2.14 -2.95 -3.32 0.83 1.11 0.03 -2.21 -3.15 -1.27 1.35 -0.8 1.85 -0.07 1.92 -2.96 -3.94 0.89 1.05 -0.83 0.4 - - - - -2.43 2.65 -0.7 -1.17 0.8 -0.92 0.26 -0.44 1.02 0.15 1.52
-1.53 -1.1 -1.32 -1.93 -0.67 -0.69 0.09 -0.56 -0.77 -0.03 1.09 -1.75 -1.93 -0.26 -1.66 0.06 -1.76 -0.19 -1.94 0.37 0.66 -0.67 0.6 -0.6 -0.05 -0.1 1.0 -0.32 -1.52 -1.38 -2.05 -0.26 0.44 1.43 -1.29 -1.11 -1.82 -0.64 -0.13 1.86 0.85 1.73 -1.39 -1.94 -0.14 0.11 -0.03 -0.27 -1.55 -3.85 -1.04 -2.4 -1.59 -1.89 -0.2 -0.04 0.64 -0.52 0.33 -0.47 2.85 -0.26 1.43
-0.03 0.35 0.08 0.65 -0.78 -0.66 -1.29 -0.79 -0.56 -1.07 0.44 0.14 -0.41 0.66 -0.89 0.61 -0.45 0.92 -0.55 -0.18 0.06 0.01 0.51 0.48 -0.16 0.05 0.32 -1.78 0.17 0.22 -0.24 0.7 -0.39 0.34 0.1 0.21 0.08 -0.7 -0.02 0.3 0.04 0.25 -0.16 -0.45 0.63 -1.32 -0.84 -1.13 -0.53 -1.19 1.04 0.35 -0.12 0.29 -0.11 -0.89 0.24 0.12 -0.02 0.18 0.07 0.22 -0.05
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.