Heatmap: Cluster_152 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
1.07 -0.35 -0.35 -3.82 -2.29 1.14 -1.58 -0.21 -1.15 -1.5 1.34 -4.0 -3.47 1.08 -3.27 0.96 -3.35 0.58 -3.49 -1.53 -2.21 3.78 2.23 -2.84 1.81 -2.96 1.13 -1.43 -3.36 -3.18 -3.07 0.1 -0.96 -2.43 -3.24 -2.96 0.31 -1.64 -1.25 0.27 -0.63 1.8 -3.6 -3.6 0.78 -1.57 -1.73 -1.82 -2.21 -6.07 0.45 -3.1 -3.55 -2.0 -2.42 -0.24 -1.16 -1.94 -2.47 -1.06 1.64 -2.08 -0.52
1.19 0.32 0.16 0.58 -0.19 0.66 -0.14 0.49 0.24 0.1 -1.25 -5.0 -4.01 -0.92 -4.16 -0.94 -3.92 -0.96 -4.76 -2.04 -0.26 3.8 1.43 -2.0 1.77 -2.8 -0.7 1.0 -4.49 -4.58 -4.67 -1.3 -1.49 -0.18 -4.62 -4.11 0.82 -0.49 -1.03 -2.78 0.22 -1.91 -3.94 -4.02 -1.06 0.25 0.81 0.57 -5.31 -9.18 -2.13 -4.46 -3.93 0.1 -0.78 2.12 0.63 -0.45 0.49 -0.02 -1.31 -1.36 -2.53
2.44 0.74 1.06 -5.0 -2.58 -0.78 -2.08 -0.82 -1.34 -0.83 1.35 -8.05 -4.99 0.26 -4.51 0.03 -5.0 -0.34 -4.74 -2.34 -1.41 4.48 0.82 -5.18 2.71 -5.36 0.56 -2.0 -5.93 -5.7 -4.86 -1.16 -1.98 -1.2 -5.5 -4.96 1.35 -2.76 -1.03 -3.87 -0.39 -2.23 -6.68 -5.38 -0.26 -2.8 -2.08 -2.26 -6.92 -5.25 -2.53 -2.47 -6.83 -2.42 -2.3 0.48 -0.39 -1.34 -0.27 -0.6 -1.87 -1.44 -2.83

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.