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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1.07 | -0.35 | -0.35 | -3.82 | -2.29 | 1.14 | -1.58 | -0.21 | -1.15 | -1.5 | 1.34 | -4.0 | -3.47 | 1.08 | -3.27 | 0.96 | -3.35 | 0.58 | -3.49 | -1.53 | -2.21 | 3.78 | 2.23 | -2.84 | 1.81 | -2.96 | 1.13 | -1.43 | -3.36 | -3.18 | -3.07 | 0.1 | -0.96 | -2.43 | -3.24 | -2.96 | 0.31 | -1.64 | -1.25 | 0.27 | -0.63 | 1.8 | -3.6 | -3.6 | 0.78 | -1.57 | -1.73 | -1.82 | -2.21 | -6.07 | 0.45 | -3.1 | -3.55 | -2.0 | -2.42 | -0.24 | -1.16 | -1.94 | -2.47 | -1.06 | 1.64 | -2.08 | -0.52 | |
| 1.19 | 0.32 | 0.16 | 0.58 | -0.19 | 0.66 | -0.14 | 0.49 | 0.24 | 0.1 | -1.25 | -5.0 | -4.01 | -0.92 | -4.16 | -0.94 | -3.92 | -0.96 | -4.76 | -2.04 | -0.26 | 3.8 | 1.43 | -2.0 | 1.77 | -2.8 | -0.7 | 1.0 | -4.49 | -4.58 | -4.67 | -1.3 | -1.49 | -0.18 | -4.62 | -4.11 | 0.82 | -0.49 | -1.03 | -2.78 | 0.22 | -1.91 | -3.94 | -4.02 | -1.06 | 0.25 | 0.81 | 0.57 | -5.31 | -9.18 | -2.13 | -4.46 | -3.93 | 0.1 | -0.78 | 2.12 | 0.63 | -0.45 | 0.49 | -0.02 | -1.31 | -1.36 | -2.53 | |
| 2.44 | 0.74 | 1.06 | -5.0 | -2.58 | -0.78 | -2.08 | -0.82 | -1.34 | -0.83 | 1.35 | -8.05 | -4.99 | 0.26 | -4.51 | 0.03 | -5.0 | -0.34 | -4.74 | -2.34 | -1.41 | 4.48 | 0.82 | -5.18 | 2.71 | -5.36 | 0.56 | -2.0 | -5.93 | -5.7 | -4.86 | -1.16 | -1.98 | -1.2 | -5.5 | -4.96 | 1.35 | -2.76 | -1.03 | -3.87 | -0.39 | -2.23 | -6.68 | -5.38 | -0.26 | -2.8 | -2.08 | -2.26 | -6.92 | -5.25 | -2.53 | -2.47 | -6.83 | -2.42 | -2.3 | 0.48 | -0.39 | -1.34 | -0.27 | -0.6 | -1.87 | -1.44 | -2.83 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.