Heatmap: Cluster_77 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
3.0 - 1.4 - 0.22 - - - 0.72 0.83 2.65 2.8 - - - - - - - - - - - - - - - 2.56 2.66 1.64 1.25 - - - 1.5 1.75 0.02 - - - - - 2.0 - - - - - - - - - 0.39 - - - - - 2.1 - - - -
-1.17 -0.64 -0.49 -0.4 -1.83 -0.81 -1.24 -0.65 -1.83 0.22 -0.79 -1.23 -2.38 0.78 -2.43 0.8 -2.45 0.57 -2.14 -0.74 -0.8 0.66 -0.85 -1.85 -0.62 -2.3 0.49 1.71 -2.21 -1.5 -2.12 0.41 -2.0 -1.79 -1.96 -1.99 -0.82 0.26 -0.97 -0.42 -1.07 0.69 -1.38 -1.82 0.42 2.15 3.05 2.76 -5.4 -4.96 -1.96 -4.23 -1.41 0.97 -1.0 2.16 -1.6 -2.24 -1.69 -0.86 -0.16 -0.94 -0.02
0.05 -0.14 0.47 -2.27 0.61 0.12 0.51 0.43 0.57 0.13 1.21 0.8 -0.33 -2.5 -1.08 -1.59 0.01 -1.08 -0.19 -0.07 -0.22 0.0 0.82 0.29 0.74 -0.07 -0.66 0.51 0.19 0.66 -0.56 -1.8 -0.68 -0.85 0.62 0.31 1.19 -1.45 0.24 -1.67 1.25 -1.2 0.34 -0.51 -1.43 -0.08 1.25 1.22 -3.46 - -2.71 - 0.27 1.34 -1.55 -0.8 -1.02 -0.2 -1.35 -0.29 -2.18 0.94 -0.65
- 1.71 - - 0.51 - - - - - - - 2.77 3.1 0.46 0.72 2.1 3.05 1.53 - - - - - - - -0.62 - - - - 2.45 - - - - 0.9 - - - - - - - 0.9 - - - - - - - - 1.76 2.48 - 1.48 - - - 1.49 - -
0.74 3.3 2.57 - -2.45 -1.43 -5.89 -1.55 -1.91 -3.67 2.05 - -7.54 1.15 -7.54 1.1 -8.48 1.33 -8.48 -0.28 -0.96 -4.83 -4.21 -4.5 -5.56 -7.94 2.33 0.44 - - -7.47 1.46 0.74 -1.03 - - -0.29 -1.88 -2.68 -1.17 2.04 -1.27 - -6.21 1.38 -0.47 1.77 1.11 -4.13 - 0.77 -7.09 - -2.09 -2.88 0.54 -1.27 -2.65 -2.17 -3.83 -0.94 -2.34 -2.52
- 3.25 - - - - - - - 1.33 - - - - - - 2.05 - - - 3.0 - - - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - 1.21 2.2 - - - - - - - - -
-6.73 -6.03 -8.02 -3.46 -4.08 0.33 -4.03 -1.16 -3.05 -1.72 -4.06 -2.97 -4.56 0.05 -6.24 -0.24 -7.2 0.01 -4.26 1.29 -1.54 -2.34 -3.04 -7.11 -4.62 -5.5 -0.44 1.22 -6.15 -4.83 -5.19 -0.33 2.34 -1.37 -5.49 -5.4 -5.43 -0.36 1.45 0.06 0.57 -0.66 -4.95 -5.82 0.03 2.38 2.94 2.29 - -8.02 -7.17 -5.22 -5.45 -0.73 0.16 1.17 -1.49 0.78 -1.61 2.93 -0.54 1.69 0.36
4.65 - - - - - - - - - - - - 4.45 - - - - - - - - - - - - - - - - - - - - - - 4.0 - - - - - - - - - - - - - - - - - - - - - - - - - -
-2.02 -1.3 -1.53 - -3.01 -2.79 -3.33 -2.92 -3.31 - 0.72 -3.21 - -2.39 -5.84 -2.78 - - - -0.38 -4.86 -1.64 -1.2 -4.69 0.79 -4.68 -0.33 1.75 -5.39 - -4.19 -2.13 -0.69 -1.4 -5.52 - -3.31 -1.28 -3.86 - -0.86 -0.4 -5.02 -3.75 -3.43 2.59 4.35 4.17 - - 0.87 - -5.64 -4.66 -4.84 -3.53 -4.83 -2.67 -3.32 -0.33 -0.74 -2.83 -3.24
-1.62 -2.23 -2.64 - -4.53 - -3.88 -2.32 -3.34 -3.89 -3.97 -1.24 -2.9 - - -4.19 - - -2.82 0.64 -3.47 1.65 0.3 -4.86 1.93 -3.84 -0.86 2.36 - - - - -0.15 -0.3 - - -2.28 -1.62 - -3.45 -0.89 -1.14 - - -4.04 2.63 4.25 3.98 - - - - - -2.69 -3.45 - - -1.6 - - -1.85 - -
-2.65 -3.66 -2.25 - -2.66 -1.31 -1.94 -2.75 -2.94 -0.47 -1.55 -4.85 -4.51 -1.88 -4.48 -3.65 - - - 0.74 -1.7 -1.48 1.12 -2.22 -0.57 -4.87 1.14 1.63 - -5.02 - -5.1 -0.04 1.44 - -3.98 -3.82 -2.23 -2.5 -1.68 -2.18 0.32 -5.65 -3.8 -3.49 2.69 4.23 3.69 - -3.68 -4.41 -4.05 -3.96 -1.52 -1.67 -0.99 -3.45 -0.61 -0.85 -0.79 -0.14 -1.3 -1.89
0.67 2.73 2.24 -5.99 -3.42 -2.56 -2.07 -2.09 -4.31 -0.77 -2.38 -4.33 - -6.46 -3.96 -6.53 - - -4.71 2.0 -0.99 -1.02 1.09 -1.93 -1.77 -4.0 -1.37 1.81 -5.71 -5.76 - -7.37 1.95 -0.11 - -5.66 -0.5 -2.62 -5.19 -4.45 -1.4 -1.57 -4.77 -7.68 -5.35 1.63 3.68 3.36 -2.14 -3.55 -0.89 -3.33 -7.54 -2.07 -3.6 -0.43 -3.04 -1.1 -2.67 -0.32 -2.0 -3.17 -
-4.47 - - -4.52 - -4.75 -4.08 -1.76 -5.16 -3.72 -5.82 -4.67 - - - -3.05 - - - 2.24 -3.74 -3.35 -1.46 - -1.25 -6.73 -0.11 2.22 - - - -4.91 1.87 -0.1 - - -5.52 - -4.31 - -1.62 -0.18 - - -3.87 2.39 4.44 3.91 - -4.49 -2.05 - - -2.31 -3.29 -2.4 - -1.35 -5.36 0.21 -0.7 - -5.27
-2.63 -4.3 -3.13 - -3.95 -3.7 -3.53 -1.98 -4.0 -2.5 -3.47 -2.32 - -3.07 -4.53 -2.11 - -2.17 -4.9 0.09 -2.98 -3.74 -2.23 -5.38 -2.23 - 0.08 2.11 -5.04 -5.19 -6.49 -3.32 1.12 -0.54 -4.56 - -3.53 -2.97 - -5.53 -1.96 0.01 -5.12 - -4.53 2.31 4.71 4.04 -5.94 - - - -4.51 -2.02 -4.53 -1.4 -5.52 -2.36 - -1.96 -0.99 - -
-0.86 -0.15 - 3.73 - - -0.53 0.06 - - 0.11 1.26 - - - - -0.32 - - - - - -0.49 - 0.26 - -1.43 - - - - 0.04 - - -0.04 - -0.59 - - - - - -0.54 - - - 2.06 2.03 - - - - - 4.66 0.64 - - - - - 0.65 - -
0.95 0.39 1.3 1.13 -0.81 -1.66 -0.68 -1.07 -1.09 -1.64 -1.16 -1.01 -1.66 -0.75 -1.07 - -1.01 - 0.22 2.18 - 2.9 1.38 -0.77 0.55 0.28 0.62 -0.27 -0.58 -0.63 -2.57 -1.26 1.93 -1.65 -0.27 -0.14 0.37 0.19 -0.66 -1.65 0.33 - - -0.23 -0.64 0.74 1.79 1.07 - - - - -1.43 0.61 -0.05 - - -0.72 - 0.93 -1.62 -0.04 -1.61
0.56 0.48 1.26 -2.28 -2.47 -2.25 -1.39 -1.78 -2.15 -1.94 0.19 0.34 -1.22 -3.76 -1.54 -3.15 -0.87 -3.01 -1.49 -1.41 -3.08 -1.38 -1.27 -1.46 -0.93 -2.55 -0.57 3.14 -0.31 -0.66 -0.8 -3.23 -1.3 -2.63 -0.02 -0.43 3.1 -0.3 -2.06 -3.41 -0.81 -5.28 -0.55 -0.86 -3.28 1.03 3.57 2.48 -5.69 - - - -1.19 -1.55 -2.27 0.39 -1.71 -2.06 -3.23 -1.7 -3.52 -0.74 -2.15
-0.64 0.08 2.22 - -0.86 0.33 - -0.83 -1.32 -2.81 0.01 - -2.47 0.63 -2.46 0.11 - 2.05 - -0.44 -1.49 -0.52 -2.9 -1.91 0.11 -2.9 1.6 -1.1 -0.94 -2.12 -0.07 1.84 -0.49 -1.48 - -2.05 0.28 - 0.11 - -0.47 - -1.06 -0.09 2.2 0.92 2.14 1.51 - - - - -0.24 2.16 -0.46 0.44 - -1.49 -1.54 0.52 -0.45 -0.45 1.54
- - - 3.43 - - 0.68 -1.26 -1.1 -1.14 -0.18 -0.03 - 2.43 0.34 0.58 -0.62 - 0.4 1.37 - - - - - - -1.73 0.72 -0.14 - - 2.06 - - -0.34 -0.24 -0.29 - - - - - - -0.67 - - - - - 0.56 3.58 3.1 - - - - 0.37 - - - - 0.35 -
-1.28 -2.88 -2.88 -2.33 -1.66 -1.27 -1.34 1.78 -0.1 -1.44 -1.63 2.83 -1.3 -1.21 -3.11 -0.68 -1.75 -2.85 -0.87 0.61 0.86 -2.5 -1.09 0.05 -2.99 -0.52 -0.73 0.86 -3.58 -1.13 -1.47 -0.39 0.88 0.47 -1.74 -2.05 -1.04 2.6 1.41 0.35 1.63 -0.3 0.05 -2.49 -0.1 0.46 1.33 0.75 0.07 -3.88 -0.45 -2.67 -0.19 -0.83 -0.51 0.68 -0.49 0.11 -3.18 0.59 -2.09 -1.09 -0.77
-0.55 1.16 1.18 - 0.0 -0.1 - 0.44 1.04 - 0.43 - - 1.84 - - - - 1.01 1.98 0.91 - - - - - -1.11 - 0.41 0.41 -0.01 0.35 - 0.94 0.44 - 1.33 - - 0.94 0.94 1.93 - - - - - - - - - - - 3.22 2.54 - - - 0.89 0.94 0.97 - -
0.06 - 1.79 - 1.11 0.51 0.45 0.16 0.11 - 1.04 - - - - - - - - - - 0.15 - 1.15 - - 0.92 - - - - - - - - - 0.4 - - - - - - - - - - - - - 1.63 - - 5.2 - - - - - 1.55 - - -
0.18 1.55 1.86 0.87 -2.0 -0.63 0.43 -1.12 0.19 -0.87 0.78 -1.39 -1.45 - -2.01 - -3.57 - -3.52 1.42 1.07 0.82 0.71 -0.33 -0.27 -0.77 -0.76 -3.22 -1.77 -1.89 -1.08 - 1.38 0.91 -2.58 -2.6 -1.46 - 1.52 -0.29 1.93 0.19 -1.61 -4.51 - -2.21 -3.17 - - - -3.53 - -1.6 -2.34 0.86 -1.28 2.12 1.3 1.45 0.85 -0.13 1.37 0.93
- -0.62 - - -0.85 - -1.26 0.27 - -1.31 0.64 - - - - 0.42 - - - - - - - -0.24 - - -1.9 2.55 - - - 1.56 2.15 - - - 0.95 1.39 - 2.16 - 1.75 - - -0.43 3.35 - 0.57 - - - - - 3.7 - 0.49 - 0.02 - - 0.19 - 0.19
-1.43 -1.91 -1.97 -3.75 -1.3 0.74 -1.07 -0.84 -1.92 -0.48 0.07 -1.28 -2.13 -0.3 -2.19 -0.36 -2.16 -0.28 -2.22 0.43 -0.84 -2.25 -1.79 -2.71 -2.23 -2.68 2.94 2.35 -2.07 -1.72 -2.1 -0.39 -0.14 -0.55 -1.65 -1.52 1.74 0.59 -0.51 -0.71 -1.1 -0.33 -1.97 -2.14 -0.21 2.57 2.45 2.53 -8.89 -8.26 -7.82 -10.04 -2.15 -0.95 -0.57 -0.07 -0.74 -0.68 -0.61 -0.74 -0.25 0.01 -0.01
-0.97 -1.74 -2.38 2.72 -1.64 -0.7 -1.98 -1.43 -1.84 0.13 1.42 -1.76 -1.0 1.26 -1.64 0.78 -1.1 1.05 -1.44 -0.3 0.42 0.9 1.01 -0.16 0.43 0.38 -0.15 -0.75 -1.3 -1.03 -1.44 0.67 -0.07 -0.02 -1.15 -0.83 -1.45 0.93 -0.67 0.55 -0.33 0.42 -1.52 -2.04 0.97 -1.26 -1.73 -0.42 -4.65 -5.65 -5.25 -6.08 -1.39 -2.1 1.44 0.04 0.62 0.39 0.73 0.88 0.24 -0.0 0.38
- - - - - 2.52 - - - - - - - - - - - - - - - 3.0 - - - - 1.17 - - - 2.46 - - - - - 2.16 - - - - - 2.21 2.38 - - - - - - - - 2.6 - 3.39 - 3.42 - - - - - -
- - -2.75 0.39 -1.97 0.27 -1.4 -4.22 -2.44 - -0.91 1.47 -2.97 - -0.97 -2.71 -0.93 0.9 0.08 0.64 -0.42 - - - - - -0.92 2.31 - -1.51 -0.9 - 0.01 - -0.19 -1.47 - -1.78 1.48 0.84 -0.4 0.34 -0.14 -0.65 -1.56 2.74 2.27 1.23 - - - - -1.44 1.34 0.84 -1.65 0.38 -1.99 -2.05 1.61 -0.95 2.3 1.62
-1.74 -1.64 -1.75 -0.24 -0.91 -0.22 -0.69 -0.16 -0.58 -0.54 0.73 -1.62 -1.87 0.35 -1.84 0.5 -1.9 0.22 -2.0 1.4 -0.45 -0.95 -0.85 -0.68 -1.08 -1.19 0.58 0.43 -1.65 -1.73 -1.99 0.24 1.71 -0.69 -1.58 -1.51 -1.12 0.71 1.17 0.65 1.15 0.76 -1.53 -1.91 0.34 0.37 1.38 1.45 -2.88 -2.85 -0.72 -2.23 -1.45 -0.12 0.74 0.92 -0.34 1.19 -0.39 1.17 0.01 1.15 0.04
0.75 1.03 0.47 1.01 - - -1.19 -1.22 -0.24 - -0.28 - -0.76 0.52 0.23 - - - 1.3 0.24 - - - - - - 0.4 0.61 - 1.25 -0.72 1.22 1.22 - - 1.24 1.78 - - - - 0.22 -0.93 0.92 2.82 0.63 0.68 - - - - - 0.44 1.04 1.24 - 1.26 - - 2.23 - 1.26 0.27
- - - - - - - - - - - - - - - - - - - - - - - - - - 3.2 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.75 - - - - - - -
- - - - 5.98 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-3.23 -1.78 -1.92 3.38 -1.9 -1.38 -1.46 -1.77 -2.21 -1.9 -0.36 -2.1 -1.16 1.01 -1.01 1.06 -1.86 1.13 -1.48 -1.72 -1.25 -1.88 -0.45 -1.34 -1.99 -1.28 1.33 0.09 -1.58 -1.38 -1.52 1.37 -0.31 -0.12 -1.26 -1.85 -1.74 -0.31 -0.59 1.35 -1.47 1.61 -1.76 -1.8 0.71 -0.16 -0.15 -0.44 -2.63 -4.32 -2.14 -1.46 -1.63 1.93 -0.18 -0.31 -0.47 -0.43 0.01 0.36 1.67 -0.27 0.95
- - 1.82 4.96 - - - 0.0 - - - - - - - 1.84 - - 3.23 2.6 - 1.24 - - 1.13 - - - - 1.94 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-3.94 -3.66 -3.19 -6.6 -0.79 0.02 -0.64 1.8 0.44 2.87 1.74 -5.74 -4.75 -5.08 -3.38 -3.76 -4.81 -6.08 -4.11 0.39 1.44 0.48 0.79 -3.61 -6.28 -2.38 1.71 0.54 -4.08 -3.47 -5.62 -5.97 0.04 1.03 -4.05 -3.7 -2.43 2.57 -0.52 -2.07 -1.84 -2.76 -5.64 -4.73 -6.16 0.36 -1.42 -1.17 - - - - -6.84 -0.96 0.54 0.91 1.42 0.92 1.84 1.2 1.05 0.74 0.44
-0.07 - 0.65 2.21 - - - - - - - 2.06 0.4 - - - - - 1.51 - - - - - - - 1.88 - 0.95 - 0.47 - - - 0.76 3.3 0.8 - - - - - - - 2.42 - - 1.82 - - - - 1.23 2.23 1.44 1.76 - - 1.35 - - - 1.42
- - 2.05 - - - - - - - 2.31 - - - - - - - - - - - - - 1.36 - 2.34 - - - - - 3.81 - - 2.25 - - 2.82 - - - 2.66 - 3.82 - - - - - - - - - - - - - - - - - -
- - - 1.94 -0.79 - -0.0 - - -0.53 - - 1.72 1.47 1.15 2.42 1.78 3.89 0.24 1.16 - - - - - - - - 0.68 1.5 1.23 - - - 0.65 - 1.27 - - - - - 0.99 1.25 - - - - - - - - 0.97 - - - - - - - 2.18 - -
- - - 4.58 - - 2.64 2.59 - - - - - - - - - - - 3.83 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.66 - - - - -
0.49 -0.56 -0.87 1.16 -1.21 -0.69 -0.77 -0.94 -1.18 -0.26 -1.63 0.33 -0.68 0.8 -0.38 -1.18 -0.26 -0.34 0.09 0.79 -0.37 1.74 1.45 -1.23 1.04 -0.48 -0.47 0.76 -0.08 -0.43 0.3 0.39 0.95 -1.12 -0.48 0.15 0.07 0.39 -0.04 -0.34 -0.06 -0.63 0.53 -1.38 0.08 0.71 -0.54 0.49 -3.84 - - - -0.01 2.34 -1.25 -0.41 -0.69 -0.18 -3.5 0.61 -0.41 -1.41 -1.61
-1.62 -2.7 -2.5 -1.41 -1.31 0.94 -0.62 -0.52 -1.68 -0.58 -0.4 -1.56 -1.71 0.13 -1.61 0.21 -1.77 0.28 -1.59 1.36 -0.51 -1.56 -1.99 -2.69 -1.07 -1.91 2.24 1.76 -1.65 -1.51 -1.84 0.31 1.22 -0.24 -1.68 -1.54 -0.01 -1.66 0.25 0.74 -0.35 0.84 -1.4 -1.65 0.4 2.16 1.5 1.91 -3.99 -3.75 -3.7 -2.99 -1.52 -0.37 -0.06 -1.61 0.08 0.08 -0.07 0.34 1.03 0.2 1.34
-0.07 0.15 0.06 -0.37 -0.71 0.08 0.16 0.6 -0.26 0.7 0.5 -1.11 -1.3 -1.42 -1.65 -1.48 -1.42 -1.42 -1.3 0.43 1.16 -1.0 -1.82 -0.53 -1.06 -1.45 0.48 0.13 -1.34 -0.85 -1.47 -1.93 1.27 -0.46 -1.28 -0.9 -0.69 1.97 0.55 -1.38 1.31 -2.07 -1.37 -1.41 -1.37 -0.53 -0.14 0.1 -3.45 -2.66 1.67 0.48 -1.47 -3.47 0.8 1.18 1.77 1.0 1.44 0.93 -1.45 -0.24 -1.52
- - - 5.82 - - - 0.86 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.28 - - - - - - - - - - - - - - - - - - - -
0.58 - - - - - - - - 0.73 - - 2.04 - - 2.33 - - - 2.1 - - - - - - 0.85 - 1.59 - - - - - - - 1.44 - - - - - - - - 2.44 - - - - 2.14 - 1.27 4.49 - - - - - - - - 2.06
-0.12 1.09 0.6 -0.18 -0.37 -0.28 -2.11 -0.24 1.19 -0.75 1.33 -1.32 - 1.52 - 1.76 -1.91 -0.66 - 0.66 - - - - - - -0.06 -0.56 -1.49 0.1 -0.91 2.02 1.03 -0.97 -1.46 -1.53 -0.56 -0.7 -0.97 0.05 0.04 -0.97 -1.13 - 2.78 2.02 0.47 1.45 - - 0.12 - -2.72 2.0 - -0.63 -0.94 - - 0.04 - 0.06 0.06
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.