Heatmap: Cluster_168 (HCCA)

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
3.54 8.73 7.31 2.84 1.52 1.35 0.84 1.36 0.83 1.34 1.3 0.8 1.23 1.38 1.24 1.12 0.64 0.87 1.19 1.05 0.61 0.0 0.0 0.0 0.0 0.0 1.19 0.0 1.48 3.15 1.73 2.45 0.0 1.03 1.22 3.36 2.83 0.0 0.83 1.04 0.82 0.41 0.73 1.41 2.91 0.55 0.0 0.27 0.93 0.0 0.22 0.0 0.9 6.89 1.04 0.52 0.42 0.19 0.99 0.41 0.0 0.63 0.42
3.18 9.98 8.27 7.31 2.86 2.21 2.52 2.27 2.94 2.86 1.92 2.65 4.06 4.04 3.97 2.54 3.56 1.57 4.8 2.45 3.69 7.2 4.42 2.71 4.21 3.52 2.62 1.09 3.59 3.79 4.26 2.24 2.15 4.32 3.89 4.1 3.84 0.69 3.0 2.59 1.73 4.16 5.75 3.36 3.41 2.3 1.81 1.54 2.83 2.87 1.67 3.12 5.29 2.4 1.43 0.94 2.13 2.66 3.03 1.67 3.98 1.95 2.45

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)