Heatmap: Cluster_168 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
1.44 2.74 2.49 1.12 0.22 0.05 -0.64 0.06 -0.65 0.04 -0.0 -0.7 -0.09 0.09 -0.07 -0.22 -1.02 -0.59 -0.13 -0.3 -1.09 - - - - - -0.13 - 0.18 1.28 0.41 0.91 - -0.34 -0.1 1.37 1.12 - -0.66 -0.33 -0.67 -1.67 -0.83 0.11 1.16 -1.26 - -2.26 -0.48 - -2.58 - -0.54 2.4 -0.32 -1.33 -1.63 -2.8 -0.4 -1.66 - -1.05 -1.62
-0.04 1.61 1.34 1.16 -0.19 -0.57 -0.38 -0.53 -0.16 -0.2 -0.77 -0.3 0.31 0.3 0.28 -0.37 0.12 -1.06 0.55 -0.42 0.17 1.14 0.43 -0.27 0.36 0.1 -0.32 -1.59 0.13 0.21 0.38 -0.55 -0.61 0.4 0.25 0.32 0.23 -2.24 -0.13 -0.34 -0.92 0.34 0.81 0.04 0.06 -0.51 -0.86 -1.09 -0.21 -0.19 -0.97 -0.07 0.69 -0.45 -1.2 -1.8 -0.62 -0.3 -0.11 -0.97 0.28 -0.75 -0.42

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.