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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1.44 | 2.74 | 2.49 | 1.12 | 0.22 | 0.05 | -0.64 | 0.06 | -0.65 | 0.04 | -0.0 | -0.7 | -0.09 | 0.09 | -0.07 | -0.22 | -1.02 | -0.59 | -0.13 | -0.3 | -1.09 | - | - | - | - | - | -0.13 | - | 0.18 | 1.28 | 0.41 | 0.91 | - | -0.34 | -0.1 | 1.37 | 1.12 | - | -0.66 | -0.33 | -0.67 | -1.67 | -0.83 | 0.11 | 1.16 | -1.26 | - | -2.26 | -0.48 | - | -2.58 | - | -0.54 | 2.4 | -0.32 | -1.33 | -1.63 | -2.8 | -0.4 | -1.66 | - | -1.05 | -1.62 | |
| -0.04 | 1.61 | 1.34 | 1.16 | -0.19 | -0.57 | -0.38 | -0.53 | -0.16 | -0.2 | -0.77 | -0.3 | 0.31 | 0.3 | 0.28 | -0.37 | 0.12 | -1.06 | 0.55 | -0.42 | 0.17 | 1.14 | 0.43 | -0.27 | 0.36 | 0.1 | -0.32 | -1.59 | 0.13 | 0.21 | 0.38 | -0.55 | -0.61 | 0.4 | 0.25 | 0.32 | 0.23 | -2.24 | -0.13 | -0.34 | -0.92 | 0.34 | 0.81 | 0.04 | 0.06 | -0.51 | -0.86 | -1.09 | -0.21 | -0.19 | -0.97 | -0.07 | 0.69 | -0.45 | -1.2 | -1.8 | -0.62 | -0.3 | -0.11 | -0.97 | 0.28 | -0.75 | -0.42 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.