Heatmap: Cluster_40 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
-1.64 -3.14 -2.2 -1.88 -2.03 -1.78 -3.53 -0.8 -1.18 -2.64 -1.82 -0.98 -1.71 1.29 -2.36 1.3 -1.5 1.55 -1.48 -0.68 -1.85 -0.87 -0.41 -2.67 -1.75 -3.64 0.93 -0.27 -1.3 -1.2 -2.17 2.14 -1.14 -2.25 -1.64 -2.0 0.11 1.36 -0.1 0.26 -1.52 0.72 -0.83 -1.94 1.73 -0.16 0.51 1.0 - - - - -1.27 3.98 -0.46 0.14 -1.54 -1.22 -2.57 -0.28 -0.08 -0.64 -0.72
- - - - -4.8 - -3.88 -2.48 - -3.18 -0.12 - - -1.9 - 1.18 - 0.84 - 0.24 - - - - - - -0.07 0.93 - - - 0.87 0.21 -2.78 - - -4.85 2.51 0.39 0.39 - 0.54 - - 0.89 2.13 1.74 1.79 - - - - - 3.62 1.48 1.13 - 0.64 - 0.39 1.24 1.77 0.56
1.01 -3.04 -3.01 - -2.24 -1.23 -1.23 -1.09 -3.7 -1.08 -2.77 -1.03 -2.25 0.06 -1.67 -0.41 -1.63 - -2.17 -0.23 3.58 -3.66 -1.17 - - -3.63 1.46 -0.88 -1.76 -2.78 -0.88 -0.54 - 2.38 -2.76 - 1.63 -1.06 -2.25 0.33 0.32 1.65 -0.43 - -2.84 -0.29 -1.83 -0.85 - - - - -2.45 3.48 -2.24 -0.93 2.02 -0.05 -1.31 -0.26 -1.23 -1.23 -2.26
1.04 -0.44 0.01 -1.39 -2.43 -3.7 -0.94 -0.98 -3.19 -2.04 -2.27 -0.42 -1.76 1.18 -1.57 1.77 -0.81 1.56 0.01 -1.15 -1.46 0.33 0.6 -2.6 0.61 -2.83 1.32 -1.37 -1.68 -0.54 -0.52 1.94 1.04 -1.76 -1.54 -0.55 1.88 -1.91 -1.75 0.06 -1.18 -0.58 0.75 -0.33 1.31 -1.78 -0.99 -0.77 - - -1.67 - -0.32 3.25 -1.74 -0.11 -0.73 -1.5 -3.82 -1.17 0.27 -1.41 -0.92
- 1.15 1.75 - - 0.07 - -1.14 - - - - - - - 1.18 - - - - - - - - - - 1.32 - - - - - - - 0.43 - -0.29 - - 3.52 - 4.1 -0.24 - - - - - - - - - -0.88 1.81 - - - - - - 2.54 - 3.28
-1.54 -0.81 0.18 2.31 -0.08 - -0.33 1.0 -1.48 -1.39 - - -0.05 - - - -1.02 -0.79 -1.0 -0.02 - 0.16 1.26 -1.52 -0.42 -1.48 0.98 0.34 - - - - 0.93 -0.06 -0.56 - 1.34 - - 2.76 -0.07 2.94 -1.22 - - - 0.37 0.36 - - - - -0.82 0.72 0.96 1.27 0.98 - -0.11 -0.06 - 0.97 1.53
-5.42 - -4.69 - -3.15 -0.81 -4.35 1.76 -4.38 -1.14 3.67 - - - -4.94 0.88 - - -4.88 -3.9 -1.15 1.73 2.63 - - -4.34 4.61 - - - - -1.72 - -0.94 - -4.51 -3.52 -1.39 -3.94 -1.34 - -0.76 - - -2.2 -1.23 -0.69 0.05 - - - - - 1.8 - -1.28 - -3.95 - - -1.1 - -2.94
- - - - -3.86 -2.85 - 0.84 - -0.2 3.97 - - - - 0.59 - - - - -1.85 1.86 2.92 -3.31 -3.12 -3.22 4.69 - - - - -1.43 - -0.84 - - -2.46 - - 0.16 - -1.83 - - -1.41 - - - - - - - - -0.01 - - -1.82 - - -1.84 -0.23 - -
-1.06 -1.57 0.18 - -3.43 - -2.54 0.35 -2.23 -3.85 -2.9 - - - - -2.13 - - - -0.37 0.92 - -1.24 -3.78 - - 3.27 - - - - -0.39 - 3.47 -3.05 -2.8 -0.35 - -0.38 3.01 -1.39 4.1 -2.55 - -2.95 -2.01 - -1.97 -2.79 - - - -2.59 -1.54 -2.37 -2.06 1.23 - - -1.39 -0.36 - 0.43
- - - 1.11 -0.05 - 1.46 1.03 - -1.36 -0.19 -0.04 0.33 - 1.33 - -0.64 - - 2.68 0.31 0.52 0.21 - 0.96 - 3.27 - -0.21 - 0.97 - - 0.32 - - -0.3 0.58 - 1.33 - 0.32 - - 1.33 - - - - - - - 0.54 - - - 1.37 1.19 - - 0.35 2.35 0.32
-0.19 0.02 0.34 1.19 -2.17 -1.75 -2.02 -1.68 -2.03 -2.26 -2.2 -2.34 -1.2 1.06 -1.97 0.91 -0.78 0.55 -2.62 -0.0 -1.36 0.35 0.12 -2.58 -1.28 -2.09 1.22 -1.06 -1.75 -1.39 -1.5 1.26 0.01 -1.34 -1.69 -1.56 0.61 -0.33 -1.06 -0.75 -0.58 0.34 -0.12 -2.4 0.6 -0.95 -0.19 -1.04 -4.55 - -5.07 -5.7 -0.91 4.3 -1.14 -1.65 -2.53 -0.22 -3.62 0.34 -0.87 -0.04 0.11
-1.01 -1.14 -0.8 0.96 -0.12 -0.84 -1.15 -0.5 -0.25 -1.08 -2.01 -1.68 -0.85 -0.63 -1.52 0.14 -1.27 -0.24 -1.11 0.24 -1.18 -1.56 -2.26 -3.86 -4.2 -3.83 1.43 -0.82 -1.43 -0.8 -1.49 0.32 0.76 -0.93 -0.59 -0.54 0.1 -0.78 -0.77 -0.13 -0.9 0.13 -0.48 -1.5 -0.36 -0.23 0.2 -0.32 -0.51 -3.79 -2.93 -5.57 -0.9 4.36 -1.15 -1.99 -0.94 -0.22 -1.32 0.41 -0.16 0.18 0.73
- - - - 0.8 0.74 0.35 - 1.33 3.01 - - 0.78 - - - 1.81 - - - 4.08 - 0.65 - - 0.34 - - - - - - - 2.76 - - - - - - 2.75 - 0.6 - - - - - - - - - - 2.96 - - - - - - - - -
-0.52 1.46 1.2 - -0.04 -0.39 -0.01 -0.22 1.52 2.71 - - -2.36 -0.49 -1.35 0.23 0.49 -0.51 -2.31 -0.36 2.78 - -2.48 - - - 0.13 - -1.9 -2.01 -2.31 -0.97 - 3.22 -0.95 -1.78 -1.19 - -1.37 - 1.63 - -0.95 -0.02 -1.95 -0.98 - - - - -1.28 - -3.17 3.04 -0.35 - -0.35 - -0.42 -0.36 -0.34 -1.34 -
- 2.5 1.92 - - - - -0.91 0.24 3.15 - 1.32 - 1.0 - - - - - - - - - - - - -0.53 3.06 - - - - - 4.0 - - 0.61 - - - - - 0.52 - - - - - - - - - -0.08 3.26 - - - - - - - - -
-0.47 0.84 1.26 0.8 0.05 -0.84 -0.14 -0.51 0.9 2.65 0.5 - -0.98 - - -0.73 - - - 1.02 2.57 - - - - - -2.01 - - -0.51 - 0.99 - 3.47 - - -2.2 - - 0.02 2.01 - - - - - - 0.41 - - - - -0.18 1.26 0.03 1.34 1.05 - 0.95 - 1.04 0.04 -
- 2.77 3.05 - -0.8 - -0.19 - 0.78 2.46 0.71 - - - - - - - - - 1.21 - - - - - - 1.6 - - 0.28 - - 1.22 - 0.65 - - 1.23 - 3.54 - 1.06 - - - - - - - - - - 2.03 - - - - 1.16 - - - 2.24
0.67 - - - -1.45 -0.28 -0.53 0.5 -0.87 - 1.64 - -0.45 - - - - - 0.62 1.59 - - - - - - 0.87 - - 0.04 - 2.29 2.56 - - - -0.64 - 0.57 1.58 - 2.57 - - 2.99 - - 0.97 1.75 - - - -0.22 - 0.58 - 0.59 1.56 0.52 0.57 - 0.6 -
-1.14 0.21 0.13 -0.02 -1.17 -0.57 -1.51 -0.91 -0.77 -0.9 0.29 -2.34 -1.83 -1.27 -1.66 -0.18 -2.28 -0.6 -1.59 0.42 -0.4 0.48 -0.08 -2.27 -0.55 -1.81 3.85 -0.25 -1.77 -1.24 -2.08 -0.14 0.74 -0.59 -1.91 -1.73 -1.39 0.45 0.37 -0.38 0.54 0.35 -1.86 -2.43 -0.21 0.02 0.27 0.14 -4.79 -5.75 -1.06 -2.28 -1.68 0.37 0.27 -0.29 0.04 1.11 0.21 0.79 0.29 1.23 -0.31
0.98 0.9 -0.1 2.02 -1.42 -0.29 - - - -2.02 -0.86 - - 1.94 - 1.23 0.28 3.28 1.29 - - - - - - - -0.5 - -0.88 -0.87 -1.26 2.52 2.23 -0.35 - -0.76 -1.56 - -0.34 - 0.64 - -1.51 - 1.4 - - - 1.25 -1.12 -0.26 - - -1.16 -0.33 - 1.27 - -0.4 -0.34 1.27 -0.32 -0.31
-0.78 -3.9 -5.2 - -5.81 -2.3 -6.86 -1.76 -4.9 -3.23 -4.37 -5.81 -4.13 1.09 -3.85 2.28 -4.82 1.19 -2.92 -3.43 -1.22 -1.33 -2.97 - -5.26 -6.82 1.98 -3.05 - -3.2 -6.39 2.53 -2.87 -5.45 -5.03 -4.38 0.07 -2.39 -3.12 -1.98 -2.88 -1.2 -2.52 -4.37 1.14 -2.73 -2.43 -2.23 - - - - -2.76 4.95 -2.26 -1.03 -1.95 -0.5 -5.51 0.11 -0.51 -0.96 -1.03
-0.17 -3.77 -3.43 -4.21 - -3.85 - -1.92 -4.43 -6.38 -2.18 - -3.67 1.01 - 2.26 -3.95 1.86 -5.94 -3.4 -1.31 -2.21 -1.78 -6.46 - - 2.28 - -4.49 -3.24 -3.92 2.7 -3.0 -0.82 -4.66 -5.56 0.29 -1.03 - -1.53 -4.01 -1.0 -3.57 -4.94 1.33 -3.6 -2.55 -1.78 - - - - -2.96 4.73 -2.98 -0.41 -2.63 -1.37 - 0.37 0.36 -3.97 -0.22
2.18 -2.23 -1.4 -1.38 -3.7 -1.28 -2.71 -0.12 -2.82 -1.73 -0.28 -5.53 -3.36 1.0 -2.57 2.07 -2.66 1.32 -2.39 -2.55 -1.86 0.72 0.37 -4.61 -3.35 -4.97 2.37 -2.19 -3.36 -1.72 -2.78 2.08 -1.0 -2.17 -2.46 -2.19 2.4 -0.52 -2.17 -0.46 -1.72 -0.31 -1.16 -2.56 1.34 -1.96 -2.14 -1.06 - - - - -1.62 3.07 -1.57 0.12 -0.43 -0.52 -3.22 1.47 1.17 -0.23 -0.19
0.12 -1.45 -1.54 0.3 0.24 -0.29 0.34 0.13 0.22 0.09 -0.82 -1.48 -1.38 0.58 -1.5 1.55 -0.93 0.83 -0.83 -0.49 -1.23 -0.28 -0.95 -1.77 0.41 -2.7 2.42 -0.36 -0.89 -1.24 -1.38 1.42 -0.09 -0.31 -1.23 -0.76 1.28 0.09 -1.17 -0.42 -1.36 -0.4 -0.63 -1.12 0.64 -0.3 -0.35 0.17 - - - - -0.77 2.92 -0.95 1.02 -0.68 -1.69 -1.14 0.45 0.1 -0.54 -0.26
2.47 4.19 2.19 - - - - 0.75 - - - - - - - - - - - - - - - - - - 0.75 - - - - - - - - - 1.74 - 2.95 - - - - - - 4.34 - - - - - - - - - - - - - - - - -
- - 3.42 - - 3.16 - 2.28 - - - - - - - - - - - - - 2.77 - 3.77 - - - - - - - - - - - - - - 4.18 - - - - - - - - - - - - - - - - - - - - - - - -
-0.03 0.69 0.72 - - - - 0.24 -0.03 - - 1.11 0.45 - 2.06 - 0.52 4.22 0.52 - - - - - - - 0.43 - - - - 1.87 - - - 1.05 0.26 - 1.46 - 1.47 - - - - - - - - - - - -0.29 3.31 - - - - - - - 1.49 -
- - - - - - - - 2.03 - - - - - - - - 4.72 - - - - - - - - 3.38 - - 2.93 3.51 - - - - - - - - - - - - - - - - - - - - - 1.68 - - - - - - - - - -
1.55 -0.87 -1.11 -2.02 -5.88 -2.37 -4.96 -1.81 -3.7 -3.33 -1.51 -3.17 -3.23 2.06 - 3.07 -4.77 2.98 -2.13 -2.78 - 1.3 0.44 - -0.85 -5.18 1.97 -2.42 -1.28 -1.85 -2.76 3.19 -0.5 -2.22 -2.31 -4.23 1.54 - -2.81 -3.8 -0.81 -2.23 -1.97 -3.22 2.05 -2.4 -3.36 -3.4 -4.21 - - - -2.13 2.82 - -1.89 - -3.95 - -2.22 - -1.46 -
- - - - - - - 0.38 - - - 2.23 1.59 - 1.58 - 3.22 - - - 2.58 1.24 - - - - - - - 2.06 - - - - 1.92 - 2.38 - - - - - 2.42 - - - - - - - - - 3.13 - - - 2.6 - - - - - -
3.28 2.39 2.2 - - -1.7 - - - - 0.64 -1.21 -0.87 1.26 - 1.0 - 2.15 - - -0.86 0.57 1.67 -2.25 -1.13 - 0.9 - -0.35 - - 1.36 0.14 - - - 2.37 - - -0.85 - 0.74 -2.02 -0.75 0.15 - - - - - - - -1.04 0.37 - - -0.8 0.14 - 1.15 0.18 1.18 0.19
0.85 1.57 1.9 - -1.63 - 0.6 0.78 -1.1 -1.13 4.22 0.98 - - -0.64 0.59 - 3.1 -0.57 - 0.31 - - - - - 0.23 - - -0.19 - 0.75 - - - - 1.65 - - - - - 0.76 - -0.24 - - - - - - - 1.16 - - - 0.39 - 0.27 - 0.37 0.37 -
-1.4 -0.87 -1.03 -0.36 -2.47 -3.01 -2.61 -2.88 -3.98 -3.52 1.94 1.74 -0.88 1.18 -1.51 1.33 -0.18 1.45 -1.12 -4.48 -1.32 3.04 1.53 -0.06 0.72 -1.14 0.41 -2.01 -0.54 -0.44 -1.79 1.11 -4.11 -1.46 -0.87 -0.1 -0.52 - -3.3 -4.51 -3.3 -3.78 0.94 -0.65 1.13 -2.91 0.34 -0.49 -2.6 -5.88 2.75 -3.66 1.23 1.49 -5.09 -5.78 -0.94 -3.18 -1.58 -3.52 -5.07 -4.49 -6.06
-23.87 -16.7 -20.64 -16.08 -6.77 -6.67 -6.88 -6.33 -6.21 -6.22 -7.08 -7.13 -19.35 -23.38 0.92 -12.96 -8.24 -25.22 -10.67 -5.74 -6.76 -7.54 -7.08 -7.54 -7.74 -7.21 -6.22 0.32 -16.95 -9.31 -10.67 -21.62 -5.83 -5.73 -11.16 -11.62 -13.78 -6.02 -5.77 -6.88 -5.77 -5.7 -6.98 -18.78 -15.01 5.19 2.79 -5.19 - - - - -7.44 -19.49 -5.78 2.88 -7.36 3.1 -5.75 -5.76 -5.73 -5.79 -5.69
0.4 -2.62 -2.36 -3.4 -4.56 -4.2 -1.88 -1.32 -4.65 -4.08 -3.11 -4.54 -4.18 1.64 - 3.36 -5.13 1.03 -5.13 - -1.62 2.77 2.66 -3.29 2.34 - 1.55 - -3.68 -4.71 -4.12 2.63 - -2.19 -3.15 -4.75 -0.39 -3.92 - 1.63 - -1.37 -3.76 - 1.58 - -3.75 - - - - - -3.36 2.28 -4.17 - - - - - 1.75 - -0.84
2.45 - - - - - 1.37 0.67 -0.56 - - - - - - 2.79 - 4.24 - - - - - - - - 0.76 - - - - 2.92 - - - - 2.37 - - 0.94 - 0.94 - - 2.36 - - - - - - - - 1.82 - - - - - - - - -
0.34 3.0 2.51 - -3.3 -3.19 -2.2 -1.92 -1.46 -3.38 3.33 -3.6 -1.92 -0.76 -2.49 0.44 -1.78 - -2.16 -4.78 -1.14 -0.44 3.16 1.39 -1.52 1.39 1.42 -4.44 -2.15 -1.6 -1.76 -1.02 -1.83 -1.24 -1.72 -2.04 0.03 -2.29 -1.82 -2.0 -1.66 -2.49 -0.9 -2.77 -0.53 - -4.39 -3.42 - - - - -2.28 1.54 -1.35 -4.49 0.17 -1.75 0.29 0.09 -0.04 -1.21 -1.35
3.32 3.75 4.64 -0.86 -6.84 -4.14 -4.36 -3.57 - -2.91 2.22 -5.18 -3.23 -3.53 -3.23 -0.47 -3.77 -5.55 -4.76 -4.81 -4.83 -5.17 -1.17 -2.54 - -3.06 -0.38 - -3.33 -4.46 -2.96 -2.09 - - -3.09 -4.39 2.35 -4.56 - -3.81 - - -5.98 -5.81 -4.4 - - - - - - - -4.26 - -4.8 - -4.77 - - - -3.2 -3.21 -3.8
- - - - - - - 1.93 - - - - - - - - - - - - - - - - 2.89 - - - - - - - 5.16 - - - - - - - - - 4.0 - - - - - - - - - - - - - - - - - - - -
-0.05 - - - -1.59 -1.6 - -0.98 - -2.04 1.24 -0.93 0.43 - -0.56 0.28 0.06 2.06 0.83 0.46 1.41 - - - - - 1.23 -0.17 0.93 0.85 -0.51 0.42 0.42 -0.57 1.87 1.25 0.74 - - -0.56 -0.58 1.02 1.73 -0.56 0.44 - - 0.84 - - - - 1.36 -0.38 -0.55 - 1.48 -0.7 -0.62 - 0.46 1.04 1.44
1.24 - - - - 1.87 - - 1.3 - - 2.36 - - - - 1.78 - 3.79 - - - - - - - - - - 2.08 - - - - - 2.15 - - - - - - 2.56 - - - - - - - - 3.17 0.92 - - - - - - - - 2.75 -
- -3.88 - - -5.12 - - -0.92 - 0.25 2.86 - -1.12 -0.79 -0.51 1.11 -0.25 1.44 -0.72 -0.75 2.01 1.89 1.64 -3.53 -4.56 -4.53 -0.42 2.04 -3.64 - - 0.62 - 0.35 - -3.67 -4.24 -1.87 -1.52 -3.1 -3.12 - -3.26 -4.0 0.03 1.93 0.14 2.7 - - -3.02 - - 2.95 -0.28 -0.45 0.39 -3.12 - -0.78 - 0.62 -
2.73 3.68 3.75 4.54 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.79 - - - - - - - - - - - - - - - - - - - - - - - - - -
-4.87 - - 0.52 -2.87 -4.26 -4.23 0.78 -3.97 -1.45 0.94 - -5.97 0.13 -3.37 1.87 -4.92 0.14 -3.46 -2.76 -0.31 0.4 3.32 -3.48 -6.43 -1.99 4.85 - -5.47 -4.95 -5.89 0.49 -4.98 -0.19 -5.55 -3.69 -0.94 -4.74 -3.96 0.59 -2.81 -0.51 -7.13 -5.91 -0.68 - - -5.57 - - - - -4.73 0.23 -4.37 - -3.34 -6.11 -2.44 -3.97 0.31 -2.62 -0.63
- - - - - - - - - - - - - - - - - - - - 3.3 - - - - - 2.3 - - - - - - 3.32 - 2.75 - 3.52 - - - 3.33 - - - - - - - - - - - - - - - 3.31 - - - - -
- - - - - - - - - - -0.03 - - 1.77 - - - - -0.47 - - - - - - - 1.69 - - - 0.54 0.9 - - - - 2.53 - 0.49 - 1.48 1.48 1.9 - 1.91 - - - - - - - -1.32 4.05 - - 0.53 0.47 0.42 2.48 0.51 - 1.52
1.98 1.11 3.71 - - - 0.73 1.86 - - 1.37 - - - 0.88 2.14 - - - - - - 0.77 - - - -0.33 - - - - 2.86 - - - - 1.71 - - - - - - - 2.32 - - - - - - - 0.11 1.18 - 2.22 - - - 1.88 - - -
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.