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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -1.11 | -1.49 | -0.61 | -1.86 | 0.8 | 1.79 | 0.27 | 0.85 | -0.93 | 0.7 | 0.05 | 0.0 | 0.16 | -0.06 | 0.62 | 0.54 | 0.15 | -0.19 | 0.09 | -1.54 | 0.38 | -0.78 | 1.28 | -1.03 | -1.42 | -0.77 | -0.05 | -0.5 | -0.19 | -0.03 | 0.48 | -0.82 | -3.35 | 0.05 | 0.06 | 0.32 | -1.31 | -1.94 | -1.3 | 0.93 | -2.59 | -0.48 | 1.03 | 0.24 | -0.18 | -1.34 | -2.32 | -2.3 | -0.65 | -7.12 | -3.94 | -7.9 | 0.36 | -0.75 | -0.78 | -1.8 | 1.45 | -3.51 | 0.84 | -2.17 | 1.34 | -1.44 | 2.53 | |
| -1.35 | -1.11 | -0.88 | -2.73 | -0.26 | 0.79 | -0.33 | -0.13 | -1.53 | -0.05 | 0.29 | -0.38 | 0.19 | 0.76 | 0.24 | 0.7 | -0.39 | -0.14 | -0.33 | -2.31 | -0.09 | 0.37 | 1.92 | -0.56 | -0.0 | -0.56 | 0.2 | -0.34 | -0.71 | -0.5 | 0.13 | -0.01 | -3.52 | -0.01 | -0.21 | 0.07 | -1.55 | -1.9 | -1.26 | 1.08 | -2.52 | 0.31 | 0.36 | -0.27 | 0.3 | -1.36 | -2.37 | -1.3 | -4.92 | -7.28 | -3.11 | -7.07 | -0.28 | -0.39 | -0.88 | -1.53 | 0.85 | -2.34 | 0.79 | -1.26 | 2.1 | -0.6 | 3.04 | |
| 0.02 | 0.39 | 0.17 | -0.22 | 0.59 | 0.94 | 0.72 | 0.75 | -0.1 | 0.68 | 0.17 | 0.82 | 1.28 | -0.43 | 1.26 | -0.6 | 1.22 | -1.67 | 0.77 | -3.18 | -0.34 | 0.17 | 1.19 | 0.36 | 0.52 | -0.08 | -1.22 | -2.56 | 1.07 | 0.86 | 0.84 | -2.32 | -2.54 | -1.63 | 0.8 | 1.08 | -0.54 | -1.31 | -1.28 | -2.94 | -1.01 | -1.83 | 1.01 | 1.17 | -0.94 | -2.14 | -1.63 | -2.13 | -3.13 | - | -2.13 | - | 1.04 | -0.23 | -0.43 | -0.81 | 0.23 | -1.62 | -0.17 | -0.32 | -2.34 | -1.11 | -0.46 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.