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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| - | - | - | 3.67 | - | - | - | - | - | - | - | - | - | - | 2.9 | - | 1.94 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.86 | - | - | - | - | 2.68 | 3.09 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.08 | - | - | - | - | - | - | 2.88 | - | - | - | |
| - | - | - | 4.78 | - | - | - | 1.79 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.99 | - | - | 4.01 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| - | - | - | - | -0.62 | - | - | 0.89 | - | 0.02 | 0.84 | - | - | - | - | - | - | - | 0.44 | 1.39 | - | -0.05 | - | -0.11 | - | - | 0.2 | - | - | 2.37 | - | - | - | - | - | - | 1.73 | - | 2.94 | - | - | - | 1.77 | 0.36 | - | - | 3.78 | - | - | - | - | - | -0.41 | 2.91 | 2.37 | - | - | - | - | - | 1.38 | - | - | |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.37 | - | - | - | - | - | - | - | - | - | - | 0.89 | - | - | - | - | - | - | - | - | - | 2.89 | - | - | - | - | - | - | 3.2 | 3.51 | - | - | - | - | - | - | - | - | 3.87 | - | - | - | - | 3.03 | - | - | - | - | |
| - | 1.6 | 0.28 | 4.29 | -1.03 | -0.99 | -0.23 | 0.99 | - | 0.02 | - | - | 1.04 | - | - | - | - | - | -0.87 | - | - | 3.87 | 1.31 | 0.94 | 1.17 | -1.38 | 0.55 | - | - | - | -0.9 | - | - | - | - | -0.53 | -0.54 | - | - | - | 1.04 | - | -1.12 | -0.85 | - | - | - | - | - | - | - | - | -0.15 | -0.66 | - | - | 0.09 | - | - | - | 0.07 | - | - | |
| - | 2.84 | - | 4.37 | - | - | - | - | - | - | - | - | 3.57 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.57 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.01 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.62 | - | |
| 2.35 | 2.9 | 3.16 | 0.54 | -2.32 | -1.1 | - | -2.56 | - | -1.63 | - | - | - | - | 0.76 | - | - | 1.02 | 0.39 | - | - | -1.65 | -0.51 | -0.68 | - | - | -2.33 | 0.13 | 0.83 | 1.17 | 2.29 | - | - | - | 1.44 | -0.66 | 1.51 | - | 0.76 | -0.24 | - | 0.76 | 0.18 | -0.24 | - | - | - | - | 0.35 | - | 1.84 | 0.2 | - | -0.0 | - | - | - | - | -0.3 | -0.25 | - | - | -0.21 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.